Wall clock time and date at job start Sun Mar 29 2020 22:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30642 * 128.63885 * 2 1 4 4 O 1.20841 * 109.61777 * 179.97438 * 3 2 1 5 5 N 1.20908 * 115.90422 * 359.69361 * 4 3 2 6 6 C 1.31596 * 109.18193 * 0.49754 * 5 4 3 7 7 C 1.48277 * 128.71414 * 179.81933 * 6 5 4 8 8 O 1.21503 * 120.00109 * 179.67875 * 7 6 5 9 9 N 1.34777 * 119.99570 * 359.67584 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72350 * 9 7 6 11 11 C 1.53951 * 113.74297 * 254.01897 * 10 9 7 12 12 N 1.47814 * 86.03758 * 222.08522 * 11 10 9 13 13 C 1.36932 * 134.45715 * 204.64642 * 12 11 10 14 14 H 1.07995 * 120.00326 * 179.86751 * 13 12 11 15 15 C 1.38817 * 119.99793 * 359.86085 * 13 12 11 16 16 N 1.31613 * 120.00127 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99909 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47068 * 119.99857 * 17 15 13 20 20 H 1.48493 * 109.47426 * 240.00266 * 17 15 13 21 21 C 1.47577 * 91.05097 * 24.55007 * 12 11 10 22 22 H 1.09005 * 109.46712 * 270.01933 * 1 2 3 23 23 H 1.08994 * 109.47273 * 30.02233 * 1 2 3 24 24 H 1.09002 * 109.46697 * 150.02605 * 1 2 3 25 25 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 26 26 H 1.09000 * 112.94810 * 25.60828 * 10 9 7 27 27 H 1.09000 * 113.77101 * 336.35008 * 11 10 9 28 28 H 1.09000 * 113.76926 * 107.74289 * 11 10 9 29 29 H 0.97003 * 119.99806 * 180.02562 * 16 15 13 30 30 H 1.09005 * 113.76936 * 221.15467 * 21 12 11 31 31 H 1.08997 * 113.77659 * 89.75281 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6266 0.0005 5 7 3.6101 -0.5737 0.0067 6 6 2.4281 -1.1520 0.0006 7 6 2.1034 -2.5988 0.0009 8 8 0.9437 -2.9612 0.0005 9 7 3.0948 -3.5118 0.0014 10 6 2.7741 -4.9413 0.0077 11 6 3.0209 -5.6259 1.3643 12 7 3.5919 -6.7420 0.5813 13 6 3.7608 -8.0824 0.8046 14 1 4.2184 -8.7025 0.0480 15 6 3.3439 -8.6442 2.0036 16 7 2.7859 -7.8887 2.9255 17 14 3.5750 -10.4726 2.3085 18 1 4.2223 -11.0939 1.1251 19 1 4.4347 -10.6705 3.5031 20 1 2.2524 -11.1069 2.5398 21 6 3.9044 -5.8326 -0.5382 22 1 -0.3633 0.0003 1.0277 23 1 -0.3633 0.8897 -0.5141 24 1 -0.3633 -0.8903 -0.5135 25 1 4.0207 -3.2225 0.0020 26 1 1.7966 -5.1594 -0.4224 27 1 3.7494 -5.1107 1.9904 28 1 2.1068 -5.8849 1.8985 29 1 2.4950 -8.2812 3.7635 30 1 3.6942 -6.2563 -1.5203 31 1 4.8929 -5.3781 -0.4723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031482832.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:35 Heat of formation + Delta-G solvation = 135.864540 kcal Electronic energy + Delta-G solvation = -17934.944593 eV Core-core repulsion = 14838.015285 eV Total energy + Delta-G solvation = -3096.929308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.00990 -39.75571 -37.70733 -35.35941 -34.82657 -33.64768 -31.89143 -29.65282 -27.74554 -25.88818 -24.94048 -23.19989 -22.60337 -20.78842 -19.85105 -19.18872 -18.29043 -17.10238 -16.87930 -16.00669 -15.13005 -14.69449 -14.55004 -14.09381 -13.90434 -13.70571 -13.54993 -12.79996 -12.18307 -12.03730 -12.01057 -11.62901 -11.55786 -11.28753 -10.96137 -10.87739 -10.57533 -10.47451 -10.27987 -9.99849 -9.62835 -8.88656 -8.69611 -7.00525 -5.84282 -3.18718 0.66795 1.15824 2.68740 2.98430 3.23529 3.33789 3.36202 3.41057 3.43869 3.84976 4.40052 4.54134 4.75386 4.95470 5.06771 5.24843 5.38448 5.38541 5.44269 5.78540 5.86890 6.07266 6.26208 6.40999 6.53328 7.13299 7.19759 7.42736 7.56287 7.88735 8.08743 8.30118 8.95767 9.62223 10.46655 11.32634 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.050259 B = 0.004223 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.980403 B = 6628.121703 C = 6823.872572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.362 5.362 4 O 0.338 5.662 5 N -0.322 5.322 6 C -0.037 4.037 7 C 0.601 3.399 8 O -0.514 6.514 9 N -0.692 5.692 10 C 0.089 3.911 11 C 0.154 3.846 12 N -0.605 5.605 13 C -0.227 4.227 14 H 0.084 0.916 15 C -0.005 4.005 16 N -0.919 5.919 17 Si 0.915 3.085 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.114 3.886 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.404 0.596 26 H 0.117 0.883 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.255 0.745 30 H 0.053 0.947 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 15.367 -6.377 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 N -0.088 5.088 4 O 0.114 5.886 5 N -0.043 5.043 6 C -0.203 4.203 7 C 0.382 3.618 8 O -0.388 6.388 9 N -0.343 5.343 10 C -0.015 4.015 11 C 0.028 3.972 12 N -0.332 5.332 13 C -0.355 4.355 14 H 0.101 0.899 15 C -0.202 4.202 16 N -0.565 5.565 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.215 1.215 21 C -0.013 4.013 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.122 0.878 25 H 0.239 0.761 26 H 0.134 0.866 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.468 15.432 -6.190 16.692 hybrid contribution 0.150 -1.283 0.378 1.346 sum -1.318 14.149 -5.812 15.353 Atomic orbital electron populations 1.20350 0.82921 1.05190 1.04835 1.26254 1.00400 0.85220 0.98688 1.75040 0.91229 1.24110 1.18454 1.85053 1.23294 1.16737 1.63523 1.75363 1.23144 0.92742 1.13049 1.26314 0.87911 0.98869 1.07195 1.16515 0.86073 0.81230 0.77953 1.90821 1.18854 1.79299 1.49843 1.46085 1.08928 1.07280 1.71957 1.24181 1.00706 0.74884 1.01755 1.22734 0.98240 0.85064 0.91157 1.45707 1.70151 1.02775 1.14584 1.19038 1.34910 0.80932 1.00577 0.89851 1.24827 1.00824 0.98346 0.96196 1.69828 1.45176 1.34171 1.07316 0.86006 0.77448 0.84232 0.77803 1.20344 1.21652 1.21535 1.22873 0.94769 0.89933 0.93729 0.88762 0.89594 0.87827 0.76106 0.86564 0.95164 0.90175 0.93480 0.92882 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.22 36.01 0.37 -0.30 16 2 C 0.06 0.70 7.79 -79.33 -0.62 0.09 16 3 N -0.36 -4.26 12.22 33.76 0.41 -3.85 16 4 O 0.34 3.98 11.65 27.26 0.32 4.30 16 5 N -0.32 -4.07 12.13 33.49 0.41 -3.67 16 6 C -0.04 -0.49 7.56 -80.07 -0.61 -1.10 16 7 C 0.60 9.33 7.85 -12.13 -0.10 9.23 16 8 O -0.51 -9.16 15.58 5.36 0.08 -9.07 16 9 N -0.69 -10.68 5.37 -56.14 -0.30 -10.98 16 10 C 0.09 1.66 4.40 -70.13 -0.31 1.35 16 11 C 0.15 3.60 7.33 -2.83 -0.02 3.58 16 12 N -0.61 -15.20 3.70 -177.85 -0.66 -15.85 16 13 C -0.23 -6.27 10.70 -15.06 -0.16 -6.43 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 15 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 16 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 17 Si 0.92 21.85 29.55 -169.99 -5.02 16.82 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.11 2.20 8.69 -2.97 -0.03 2.18 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 0.98 7.31 -51.93 -0.38 0.60 16 25 H 0.40 5.47 8.57 -40.82 -0.35 5.12 16 26 H 0.12 2.28 7.51 -51.93 -0.39 1.89 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 280.32 15.07 4.22 4.22 Total: -1.00 -30.99 280.32 -4.62 -35.61 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.15 Total: 0.56 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.56 Total: 8.36 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.49 Total: -60.81 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.40 Total: -4.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.99 -4.62 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031482832.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.472 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds