Wall clock time and date at job start Sun Mar 29 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48503 * 109.47145 * 239.99471 * 3 2 1 5 5 H 1.48501 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47142 * 119.99886 * 3 2 1 7 7 C 1.38806 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99798 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.47068 * 136.06032 * 359.95035 * 9 7 2 11 11 C 1.53497 * 87.98821 * 152.91301 * 10 9 7 12 12 C 1.47072 * 136.05980 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.46583 * 92.24749 * 12 9 7 14 14 C 1.53006 * 113.46851 * 321.87155 * 12 9 7 15 15 N 1.46499 * 109.47011 * 74.49895 * 14 12 9 16 16 C 1.34775 * 119.99692 * 180.02562 * 15 14 12 17 17 O 1.21496 * 120.00376 * 359.97438 * 16 15 14 18 18 C 1.48279 * 119.99762 * 180.02562 * 16 15 14 19 19 C 1.47487 * 128.70973 * 180.02562 * 18 16 15 20 20 N 1.30654 * 102.71690 * 179.97438 * 19 18 16 21 21 O 1.20841 * 109.61815 * 359.97438 * 20 19 18 22 22 N 1.20903 * 115.90577 * 359.97438 * 21 20 19 23 23 H 0.97004 * 119.99963 * 0.02562 * 1 2 3 24 24 H 1.09000 * 113.47124 * 267.69398 * 10 9 7 25 25 H 1.09010 * 113.46572 * 38.13239 * 10 9 7 26 26 H 1.08999 * 114.20549 * 272.47826 * 11 10 9 27 27 H 1.08994 * 114.20613 * 139.65675 * 11 10 9 28 28 H 1.09005 * 109.46615 * 314.50234 * 14 12 9 29 29 H 1.08995 * 109.47035 * 194.50154 * 14 12 9 30 30 H 0.97003 * 120.00467 * 0.02562 * 15 14 12 31 31 H 1.08003 * 128.64750 * 0.25181 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0877 -2.7948 0.0010 11 6 0.3416 -4.0923 -0.6980 12 6 1.6799 -3.8154 0.0005 13 1 1.7464 -4.2461 0.9996 14 6 2.8982 -4.1408 -0.8660 15 7 4.1152 -3.6902 -0.1864 16 6 5.3179 -3.8727 -0.7666 17 8 5.3928 -4.4113 -1.8530 18 6 6.5498 -3.4171 -0.0784 19 6 7.9499 -3.5174 -0.5310 20 7 8.6102 -2.9652 0.4519 21 8 7.8372 -2.6054 1.3083 22 7 6.6679 -2.8202 1.0885 23 1 -0.4850 0.8401 -0.0004 24 1 -0.4934 -2.9538 1.0001 25 1 -0.7227 -2.1590 -0.6161 26 1 0.3821 -4.0220 -1.7849 27 1 -0.1732 -4.9840 -0.3405 28 1 2.8080 -3.6314 -1.8255 29 1 2.9506 -5.2171 -1.0296 30 1 4.0555 -3.2605 0.6813 31 1 8.3336 -3.9380 -1.4488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038834417.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:11 Heat of formation + Delta-G solvation = 141.891005 kcal Electronic energy + Delta-G solvation = -18262.445168 eV Core-core repulsion = 15165.777187 eV Total energy + Delta-G solvation = -3096.667981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.99024 -39.64636 -38.18449 -34.93551 -34.53129 -34.20674 -32.27516 -28.50181 -27.94676 -25.65639 -24.09491 -23.53561 -22.11625 -20.71684 -19.39470 -19.11187 -18.57191 -17.63946 -16.61187 -15.89221 -15.46636 -15.06964 -14.72111 -14.31125 -13.86302 -13.40510 -13.11599 -12.86514 -12.07576 -11.99415 -11.61199 -11.43698 -11.20172 -11.06548 -10.84238 -10.80335 -10.67693 -10.40282 -9.96212 -9.90669 -9.37796 -8.86741 -8.84965 -6.97040 -5.82719 -3.16038 0.72517 1.22289 2.71706 3.01904 3.35426 3.35864 3.40363 3.40835 3.45438 3.95410 4.38214 4.68909 4.84159 5.11597 5.21608 5.31342 5.47646 5.59276 5.81183 5.93959 6.20050 6.29881 6.47916 6.54461 6.67265 7.15569 7.31372 7.49594 7.52410 7.91154 8.08466 8.32717 8.96562 9.64131 10.55511 11.34139 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.007167 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.529699 B = 3905.763311 C = 5037.787194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.159 4.159 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.119 3.881 15 N -0.689 5.689 16 C 0.599 3.401 17 O -0.525 6.525 18 C -0.037 4.037 19 C 0.035 3.965 20 N -0.359 5.359 21 O 0.340 5.660 22 N -0.316 5.316 23 H 0.255 0.745 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.412 0.588 31 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 -8.908 0.309 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.198 4.198 12 C 0.017 3.983 13 H 0.067 0.933 14 C -0.004 4.004 15 N -0.339 5.339 16 C 0.381 3.619 17 O -0.401 6.401 18 C -0.203 4.203 19 C -0.150 4.150 20 N -0.083 5.083 21 O 0.114 5.886 22 N -0.036 5.036 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.247 0.753 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 9.933 -8.365 0.541 12.997 hybrid contribution 0.231 0.798 -0.256 0.869 sum 10.164 -7.567 0.285 12.674 Atomic orbital electron populations 1.69812 1.04974 1.25526 1.56011 1.24761 0.95635 0.97434 1.02246 0.86276 0.78608 0.83351 0.78018 1.21123 1.21427 1.21029 1.18772 0.89905 0.81385 1.44525 0.90397 1.45692 1.02673 0.98448 1.85884 1.22041 0.88645 0.90172 0.96593 1.23657 0.96576 0.99163 1.00427 1.22447 0.91824 0.88046 0.95937 0.93257 1.22032 0.82263 0.98659 0.97488 1.45893 1.05336 1.59050 1.23588 1.16492 0.81138 0.79773 0.84538 1.90809 1.86052 1.43618 1.19615 1.26415 0.97718 1.03490 0.92708 1.27714 0.87664 0.99099 1.00571 1.75046 1.19516 1.13500 1.00219 1.85093 1.08866 1.57105 1.37539 1.75460 1.00155 1.11869 1.16124 0.93532 0.95638 0.90880 0.90080 0.92178 0.90341 0.91485 0.75258 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 11.51 55.49 0.64 -26.00 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -5.81 10.55 -15.06 -0.16 -5.97 16 8 H 0.08 2.00 7.50 -52.49 -0.39 1.61 16 9 N -0.60 -14.32 3.65 -177.01 -0.65 -14.97 16 10 C 0.15 3.36 7.39 -8.51 -0.06 3.30 16 11 C -0.16 -2.75 8.03 -26.23 -0.21 -2.96 16 12 C 0.13 2.31 4.10 -72.41 -0.30 2.02 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.03 5.52 -4.04 -0.02 2.00 16 15 N -0.69 -11.49 5.33 -61.11 -0.33 -11.81 16 16 C 0.60 9.73 7.85 -12.13 -0.10 9.64 16 17 O -0.53 -9.48 17.05 5.37 0.09 -9.39 16 18 C -0.04 -0.53 7.56 -80.07 -0.61 -1.13 16 19 C 0.04 0.40 12.63 -14.29 -0.18 0.22 16 20 N -0.36 -4.32 12.22 30.72 0.38 -3.95 16 21 O 0.34 4.36 11.65 27.26 0.32 4.68 16 22 N -0.32 -4.50 12.13 33.50 0.41 -4.09 16 23 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.83 7.12 -51.92 -0.37 1.46 16 26 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.41 6.94 8.23 -40.82 -0.34 6.60 16 31 H 0.23 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 281.60 15.07 4.24 4.24 Total: -1.00 -30.50 281.60 -4.84 -35.35 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -3.19 Total: 2.05 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -1.73 Total: 6.91 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.45 Total: -60.81 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.41 Total: -4.71 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.50 -4.84 -35.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038834417.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.236 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds