Wall clock time and date at job start Sun Mar 29 2020 22:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99824 * 2 1 4 4 H 1.48503 * 109.47145 * 239.99471 * 3 2 1 5 5 H 1.48501 * 109.47378 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47142 * 119.99886 * 3 2 1 7 7 C 1.38806 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99798 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00154 * 0.02562 * 7 2 1 10 10 C 1.47068 * 136.06032 * 359.95035 * 9 7 2 11 11 C 1.53497 * 87.98821 * 152.91301 * 10 9 7 12 12 C 1.47072 * 136.05980 * 179.97438 * 9 7 2 13 13 H 1.08997 * 113.46583 * 92.24749 * 12 9 7 14 14 C 1.53006 * 113.46851 * 321.87155 * 12 9 7 15 15 N 1.46499 * 109.47011 * 74.49895 * 14 12 9 16 16 C 1.34775 * 119.99692 * 180.02562 * 15 14 12 17 17 O 1.21496 * 120.00376 * 359.97438 * 16 15 14 18 18 C 1.48279 * 119.99762 * 180.02562 * 16 15 14 19 19 C 1.47487 * 128.70973 * 180.02562 * 18 16 15 20 20 N 1.30654 * 102.71690 * 179.97438 * 19 18 16 21 21 O 1.20841 * 109.61815 * 359.97438 * 20 19 18 22 22 N 1.20903 * 115.90577 * 359.97438 * 21 20 19 23 23 H 0.97004 * 119.99963 * 0.02562 * 1 2 3 24 24 H 1.09000 * 113.47124 * 267.69398 * 10 9 7 25 25 H 1.09010 * 113.46572 * 38.13239 * 10 9 7 26 26 H 1.08999 * 114.20549 * 272.47826 * 11 10 9 27 27 H 1.08994 * 114.20613 * 139.65675 * 11 10 9 28 28 H 1.09005 * 109.46615 * 314.50234 * 14 12 9 29 29 H 1.08995 * 109.47035 * 194.50154 * 14 12 9 30 30 H 0.97003 * 120.00467 * 0.02562 * 15 14 12 31 31 H 1.08003 * 128.64750 * 0.25181 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.0877 -2.7948 0.0010 11 6 0.3416 -4.0923 -0.6980 12 6 1.6799 -3.8154 0.0005 13 1 1.7464 -4.2461 0.9996 14 6 2.8982 -4.1408 -0.8660 15 7 4.1152 -3.6902 -0.1864 16 6 5.3179 -3.8727 -0.7666 17 8 5.3928 -4.4113 -1.8530 18 6 6.5498 -3.4171 -0.0784 19 6 7.9499 -3.5174 -0.5310 20 7 8.6102 -2.9652 0.4519 21 8 7.8372 -2.6054 1.3083 22 7 6.6679 -2.8202 1.0885 23 1 -0.4850 0.8401 -0.0004 24 1 -0.4934 -2.9538 1.0001 25 1 -0.7227 -2.1590 -0.6161 26 1 0.3821 -4.0220 -1.7849 27 1 -0.1732 -4.9840 -0.3405 28 1 2.8080 -3.6314 -1.8255 29 1 2.9506 -5.2171 -1.0296 30 1 4.0555 -3.2605 0.6813 31 1 8.3336 -3.9380 -1.4488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038834417.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:10 Heat of formation + Delta-G solvation = 119.842618 kcal Electronic energy + Delta-G solvation = -18263.401258 eV Core-core repulsion = 15165.777187 eV Total energy + Delta-G solvation = -3097.624071 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.99984 -40.99268 -39.76380 -36.05666 -35.57748 -35.46943 -34.26059 -30.08672 -29.64008 -26.83455 -25.40482 -25.13516 -23.59644 -21.96541 -21.03290 -20.12767 -19.76057 -18.90921 -18.25543 -17.23871 -17.13753 -16.36695 -16.12911 -15.76401 -15.49475 -14.92669 -14.69647 -13.91062 -13.68586 -13.37339 -13.00597 -12.97505 -12.73302 -12.63737 -12.44802 -12.36596 -11.94395 -11.87633 -11.71570 -11.59379 -11.03208 -10.85112 -10.22680 -8.90826 -7.89882 -5.21329 -0.37558 0.29052 1.41902 1.42982 1.48817 1.53809 1.79646 2.33689 2.43127 2.46187 2.87591 3.32051 3.42830 3.69257 3.72075 3.92921 4.08594 4.33287 4.42388 4.60470 4.68610 4.85810 5.06519 5.07640 5.20612 5.31584 5.57917 5.73976 5.96172 6.19561 6.78822 6.92202 7.32131 7.62149 8.61702 9.27326 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.007167 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.529699 B = 3905.763311 C = 5037.787194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.209 4.209 8 H 0.082 0.918 9 N -0.630 5.630 10 C 0.141 3.859 11 C -0.130 4.130 12 C 0.130 3.870 13 H 0.068 0.932 14 C 0.127 3.873 15 N -0.693 5.693 16 C 0.603 3.397 17 O -0.544 6.544 18 C -0.057 4.057 19 C 0.059 3.941 20 N -0.362 5.362 21 O 0.343 5.657 22 N -0.327 5.327 23 H 0.246 0.754 24 H 0.021 0.979 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.410 0.590 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.160 -10.377 0.169 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.792 3.208 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.338 4.338 8 H 0.100 0.900 9 N -0.356 5.356 10 C 0.015 3.985 11 C -0.168 4.168 12 C 0.024 3.976 13 H 0.086 0.914 14 C 0.004 3.996 15 N -0.343 5.343 16 C 0.386 3.614 17 O -0.421 6.421 18 C -0.222 4.222 19 C -0.127 4.127 20 N -0.088 5.088 21 O 0.117 5.883 22 N -0.045 5.045 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.246 0.754 31 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 11.504 -9.868 0.415 15.162 hybrid contribution -0.204 1.169 -0.199 1.203 sum 11.300 -8.700 0.216 14.263 Atomic orbital electron populations 1.69986 1.06180 1.25342 1.58533 1.25474 0.96389 1.00359 1.03761 0.85381 0.77338 0.80009 0.78054 1.20910 1.22133 1.20362 1.19095 0.90349 0.82656 1.41678 0.89991 1.46014 1.03779 0.99976 1.85867 1.22076 0.87698 0.92330 0.96409 1.23465 0.95247 0.97963 1.00153 1.22609 0.93162 0.84774 0.97095 0.91424 1.21865 0.81911 0.99990 0.95864 1.45908 1.05594 1.59254 1.23533 1.16610 0.81452 0.79138 0.84226 1.90795 1.86441 1.44511 1.20401 1.26243 0.98065 1.04758 0.93155 1.28237 0.86056 0.97417 1.00991 1.75081 1.19305 1.14036 1.00397 1.85097 1.08438 1.57011 1.37774 1.75440 1.00881 1.11798 1.16369 0.94477 0.96071 0.94514 0.89802 0.87990 0.92646 0.88658 0.75427 0.72353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.83 11.51 21.65 0.25 -56.58 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 45.84 29.55 68.60 2.03 47.86 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.21 -11.14 10.55 84.03 0.89 -10.25 16 8 H 0.08 4.18 7.50 -2.91 -0.02 4.16 16 9 N -0.63 -29.77 3.65 -713.95 -2.61 -32.38 16 10 C 0.14 6.24 7.39 83.17 0.61 6.86 16 11 C -0.13 -4.16 8.03 30.92 0.25 -3.91 16 12 C 0.13 4.51 4.10 41.78 0.17 4.68 16 13 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 14 C 0.13 4.06 5.52 86.38 0.48 4.53 16 15 N -0.69 -21.99 5.33 -465.55 -2.48 -24.47 16 16 C 0.60 18.55 7.85 86.92 0.68 19.23 16 17 O -0.54 -18.62 17.05 -3.70 -0.06 -18.68 16 18 C -0.06 -1.51 7.56 44.29 0.34 -1.17 16 19 C 0.06 1.16 12.63 87.31 1.10 2.27 16 20 N -0.36 -7.88 12.22 -61.39 -0.75 -8.63 16 21 O 0.34 8.22 11.65 140.85 1.64 9.86 16 22 N -0.33 -8.80 12.13 -52.03 -0.63 -9.43 16 23 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 1.88 7.12 -2.38 -0.02 1.87 16 26 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 27 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.41 13.28 8.23 -92.71 -0.76 12.51 16 31 H 0.26 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -66.29 281.60 2.78 -63.51 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.41 Total: 9.99 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 4.98 Total: 18.95 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -6.22 Total: -131.49 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 1.58 Total: -8.82 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -66.29 2.78 -63.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038834417.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.352 kcal (2) G-P(sol) polarization free energy of solvation -66.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds