Wall clock time and date at job start Sun Mar 29 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99873 * 2 1 4 4 O 1.21508 * 119.99792 * 185.30786 * 3 2 1 5 5 C 1.48279 * 120.00262 * 5.30614 * 3 2 1 6 6 C 1.47492 * 128.71081 * 185.75513 * 5 3 2 7 7 N 1.30650 * 102.71549 * 180.02562 * 6 5 3 8 8 O 1.20837 * 109.61830 * 0.02562 * 7 6 5 9 9 N 1.20908 * 115.90890 * 359.69147 * 8 7 6 10 10 C 1.46500 * 119.99986 * 180.02562 * 2 1 3 11 11 C 1.53493 * 114.20842 * 59.99591 * 10 2 1 12 12 N 1.47069 * 87.98907 * 220.15192 * 11 10 2 13 13 C 1.36934 * 136.05873 * 207.09396 * 12 11 10 14 14 H 1.07993 * 119.99938 * 354.63970 * 13 12 11 15 15 C 1.38815 * 119.99621 * 174.64844 * 13 12 11 16 16 N 1.31620 * 119.99468 * 183.57727 * 15 13 12 17 17 Si 1.86798 * 120.00361 * 3.57713 * 15 13 12 18 18 H 1.48502 * 109.47235 * 174.50311 * 17 15 13 19 19 H 1.48500 * 109.46757 * 294.50015 * 17 15 13 20 20 H 1.48502 * 109.47099 * 54.50067 * 17 15 13 21 21 C 1.47077 * 87.88266 * 27.34134 * 12 11 10 22 22 H 1.08997 * 109.46809 * 275.70857 * 1 2 3 23 23 H 1.09001 * 109.46839 * 35.70657 * 1 2 3 24 24 H 1.08996 * 109.47288 * 155.70745 * 1 2 3 25 25 H 1.07994 * 128.64339 * 359.97438 * 6 5 3 26 26 H 1.08998 * 113.28151 * 193.06945 * 10 2 1 27 27 H 1.09002 * 113.46663 * 105.36848 * 11 10 2 28 28 H 1.09001 * 113.47001 * 334.93165 * 11 10 2 29 29 H 0.97006 * 120.00538 * 5.00969 * 16 15 13 30 30 H 1.09000 * 113.46409 * 87.44225 * 21 12 11 31 31 H 1.08997 * 113.46442 * 217.88000 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1694 -0.0973 5 6 1.4023 2.4486 0.1188 6 6 1.9244 3.8248 0.0248 7 7 0.8534 4.5515 0.2029 8 8 -0.1027 3.8312 0.3681 9 7 0.1180 2.6431 0.3301 10 6 2.1976 -1.2687 -0.0006 11 6 1.9060 -2.1633 -1.2133 12 7 1.9168 -3.3162 -0.3002 13 6 2.1884 -4.6542 -0.4047 14 1 2.3933 -5.0897 -1.3715 15 6 2.2001 -5.4508 0.7320 16 7 2.5300 -6.7218 0.6415 17 14 1.7477 -4.7191 2.3901 18 1 1.7077 -5.7959 3.4121 19 1 2.7624 -3.7064 2.7776 20 1 0.4136 -4.0734 2.2989 21 6 1.5015 -2.4005 0.7732 22 1 -0.3633 0.1022 1.0226 23 1 -0.3633 0.8345 -0.5998 24 1 -0.3633 -0.9366 -0.4228 25 1 2.9395 4.1507 -0.1475 26 1 3.2576 -1.1543 0.2259 27 1 2.7145 -2.1808 -1.9442 28 1 0.9320 -1.9772 -1.6659 29 1 2.8348 -7.0847 -0.2049 30 1 0.4208 -2.2770 0.8444 31 1 1.9654 -2.6202 1.7348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044074809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:45 Heat of formation + Delta-G solvation = 168.701338 kcal Electronic energy + Delta-G solvation = -18415.372826 eV Core-core repulsion = 15319.867429 eV Total energy + Delta-G solvation = -3095.505398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.16640 -40.30551 -38.30411 -35.44304 -34.80004 -34.36457 -32.32018 -28.37789 -27.20419 -26.15755 -25.52029 -24.30033 -22.74862 -20.56635 -19.30596 -19.23035 -18.37100 -17.75807 -17.40221 -16.60992 -15.60957 -15.48629 -15.14084 -14.26605 -13.90610 -13.27923 -13.16987 -13.10331 -12.73581 -12.27788 -12.10510 -11.81040 -11.70835 -11.60118 -11.39815 -11.00160 -10.68561 -10.49219 -10.42749 -9.47608 -9.23620 -9.03252 -8.55651 -7.28048 -6.39720 -3.34506 0.51649 1.05916 2.40157 2.74744 3.16834 3.24934 3.33435 3.36973 3.58634 3.64123 4.38802 4.51200 4.51966 4.68310 4.91462 5.06136 5.10104 5.30228 5.44810 5.56560 5.66439 5.76491 6.02539 6.10738 6.21674 6.24812 6.72294 6.94209 7.17225 7.77773 8.14606 8.15096 8.87654 9.38769 10.21216 11.11670 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.046823 B = 0.005159 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.851774 B = 5426.067162 C = 5578.032264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.579 5.579 3 C 0.599 3.401 4 O -0.516 6.516 5 C -0.034 4.034 6 C 0.036 3.964 7 N -0.356 5.356 8 O 0.335 5.665 9 N -0.317 5.317 10 C 0.100 3.900 11 C 0.113 3.887 12 N -0.618 5.618 13 C -0.306 4.306 14 H 0.086 0.914 15 C -0.021 4.021 16 N -0.930 5.930 17 Si 1.071 2.929 18 H -0.293 1.293 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.084 3.916 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.227 0.773 26 H 0.130 0.870 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 20.407 -0.723 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.311 5.311 3 C 0.382 3.618 4 O -0.390 6.390 5 C -0.199 4.199 6 C -0.150 4.150 7 N -0.080 5.080 8 O 0.111 5.889 9 N -0.039 5.039 10 C -0.003 4.003 11 C -0.015 4.015 12 N -0.346 5.346 13 C -0.431 4.431 14 H 0.103 0.897 15 C -0.220 4.220 16 N -0.572 5.572 17 Si 0.904 3.096 18 H -0.220 1.220 19 H -0.219 1.219 20 H -0.216 1.216 21 C -0.042 4.042 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.243 0.757 26 H 0.147 0.853 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.459 20.074 0.965 20.825 hybrid contribution 0.931 0.087 -1.851 2.074 sum -4.528 20.161 -0.886 20.682 Atomic orbital electron populations 1.22074 0.78438 1.03840 1.02827 1.47836 1.07804 1.05378 1.70053 1.16613 0.86088 0.80910 0.78160 1.90842 1.12341 1.85998 1.49797 1.26350 0.89358 0.97877 1.06339 1.27739 1.01099 0.86740 0.99380 1.75064 0.96155 1.20796 1.15972 1.85092 1.31878 1.09771 1.62171 1.75590 1.16903 0.98273 1.13160 1.23817 0.97832 0.78724 0.99975 1.22752 0.99038 0.85956 0.93707 1.45777 1.79134 1.03940 1.05787 1.20150 1.46578 0.80100 0.96319 0.89654 1.25722 0.99555 0.94972 1.01727 1.70916 1.45821 1.11994 1.28448 0.83703 0.76060 0.73741 0.76085 1.21999 1.21892 1.21606 1.23287 0.97834 0.88046 0.95037 0.91634 0.90580 0.89533 0.75670 0.85253 0.92779 0.94079 0.92745 0.93252 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 8.20 59.85 0.49 1.34 16 2 N -0.58 -8.47 3.12 -174.50 -0.54 -9.02 16 3 C 0.60 8.58 7.69 -12.13 -0.09 8.49 16 4 O -0.52 -8.67 16.59 5.36 0.09 -8.58 16 5 C -0.03 -0.39 7.11 -80.07 -0.57 -0.96 16 6 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 7 N -0.36 -3.45 12.22 30.72 0.38 -3.07 16 8 O 0.34 3.30 11.65 27.26 0.32 3.62 16 9 N -0.32 -3.40 9.36 33.49 0.31 -3.09 16 10 C 0.10 1.77 4.55 -67.67 -0.31 1.46 16 11 C 0.11 2.17 8.23 -8.50 -0.07 2.10 16 12 N -0.62 -14.84 3.69 -184.58 -0.68 -15.53 16 13 C -0.31 -8.66 11.09 -15.06 -0.17 -8.82 16 14 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 15 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 16 N -0.93 -28.97 13.70 55.49 0.76 -28.21 16 17 Si 1.07 26.32 25.09 -169.99 -4.27 22.06 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -6.75 6.36 56.52 0.36 -6.40 16 20 H -0.29 -6.57 6.67 56.52 0.38 -6.20 16 21 C 0.08 1.71 5.34 -8.36 -0.04 1.67 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 0.81 6.03 -51.93 -0.31 0.50 16 24 H 0.09 1.06 5.95 -51.93 -0.31 0.75 16 25 H 0.23 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.13 2.42 7.33 -51.93 -0.38 2.04 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.73 7.05 -51.93 -0.37 0.37 16 29 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 30 H 0.05 0.94 6.37 -51.93 -0.33 0.61 16 31 H 0.06 1.32 3.99 -51.93 -0.21 1.11 16 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -32.05 263.75 -3.51 -35.56 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -2.82 Total: -2.44 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.04 Total: 4.73 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.22 Total: -58.92 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: 0.41 Total: -4.96 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -4.27 Total: 22.06 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.05 -3.51 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044074809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.261 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds