Wall clock time and date at job start Sun Mar 29 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99873 * 2 1 4 4 O 1.21508 * 119.99792 * 185.30786 * 3 2 1 5 5 C 1.48279 * 120.00262 * 5.30614 * 3 2 1 6 6 C 1.47492 * 128.71081 * 185.75513 * 5 3 2 7 7 N 1.30650 * 102.71549 * 180.02562 * 6 5 3 8 8 O 1.20837 * 109.61830 * 0.02562 * 7 6 5 9 9 N 1.20908 * 115.90890 * 359.69147 * 8 7 6 10 10 C 1.46500 * 119.99986 * 180.02562 * 2 1 3 11 11 C 1.53493 * 114.20842 * 59.99591 * 10 2 1 12 12 N 1.47069 * 87.98907 * 220.15192 * 11 10 2 13 13 C 1.36934 * 136.05873 * 207.09396 * 12 11 10 14 14 H 1.07993 * 119.99938 * 354.63970 * 13 12 11 15 15 C 1.38815 * 119.99621 * 174.64844 * 13 12 11 16 16 N 1.31620 * 119.99468 * 183.57727 * 15 13 12 17 17 Si 1.86798 * 120.00361 * 3.57713 * 15 13 12 18 18 H 1.48502 * 109.47235 * 174.50311 * 17 15 13 19 19 H 1.48500 * 109.46757 * 294.50015 * 17 15 13 20 20 H 1.48502 * 109.47099 * 54.50067 * 17 15 13 21 21 C 1.47077 * 87.88266 * 27.34134 * 12 11 10 22 22 H 1.08997 * 109.46809 * 275.70857 * 1 2 3 23 23 H 1.09001 * 109.46839 * 35.70657 * 1 2 3 24 24 H 1.08996 * 109.47288 * 155.70745 * 1 2 3 25 25 H 1.07994 * 128.64339 * 359.97438 * 6 5 3 26 26 H 1.08998 * 113.28151 * 193.06945 * 10 2 1 27 27 H 1.09002 * 113.46663 * 105.36848 * 11 10 2 28 28 H 1.09001 * 113.47001 * 334.93165 * 11 10 2 29 29 H 0.97006 * 120.00538 * 5.00969 * 16 15 13 30 30 H 1.09000 * 113.46409 * 87.44225 * 21 12 11 31 31 H 1.08997 * 113.46442 * 217.88000 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1694 -0.0973 5 6 1.4023 2.4486 0.1188 6 6 1.9244 3.8248 0.0248 7 7 0.8534 4.5515 0.2029 8 8 -0.1027 3.8312 0.3681 9 7 0.1180 2.6431 0.3301 10 6 2.1976 -1.2687 -0.0006 11 6 1.9060 -2.1633 -1.2133 12 7 1.9168 -3.3162 -0.3002 13 6 2.1884 -4.6542 -0.4047 14 1 2.3933 -5.0897 -1.3715 15 6 2.2001 -5.4508 0.7320 16 7 2.5300 -6.7218 0.6415 17 14 1.7477 -4.7191 2.3901 18 1 1.7077 -5.7959 3.4121 19 1 2.7624 -3.7064 2.7776 20 1 0.4136 -4.0734 2.2989 21 6 1.5015 -2.4005 0.7732 22 1 -0.3633 0.1022 1.0226 23 1 -0.3633 0.8345 -0.5998 24 1 -0.3633 -0.9366 -0.4228 25 1 2.9395 4.1507 -0.1475 26 1 3.2576 -1.1543 0.2259 27 1 2.7145 -2.1808 -1.9442 28 1 0.9320 -1.9772 -1.6659 29 1 2.8348 -7.0847 -0.2049 30 1 0.4208 -2.2770 0.8444 31 1 1.9654 -2.6202 1.7348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044074809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:45 Heat of formation + Delta-G solvation = 144.884693 kcal Electronic energy + Delta-G solvation = -18416.405594 eV Core-core repulsion = 15319.867429 eV Total energy + Delta-G solvation = -3096.538165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.96119 -41.60285 -39.75514 -36.55197 -35.63680 -35.42949 -34.36212 -30.12836 -28.25072 -27.32364 -27.12003 -25.20356 -24.25971 -21.98832 -20.64957 -20.09565 -19.63490 -19.21519 -18.62949 -17.87997 -17.23682 -16.81482 -16.03681 -15.78769 -15.40509 -15.12756 -14.25314 -14.10138 -13.81007 -13.71852 -13.49207 -13.32895 -13.29415 -12.65064 -12.40875 -12.36784 -12.24545 -11.84560 -11.64506 -11.35491 -11.16093 -11.10143 -9.85120 -9.27857 -8.67902 -5.54234 -0.37551 0.32139 1.30690 1.36682 1.46878 1.65636 1.69490 2.26553 2.48166 2.51428 2.77147 2.97305 3.17483 3.40649 3.49742 3.73538 3.98246 4.12462 4.17040 4.44498 4.45870 4.49491 4.55299 4.66977 4.85373 4.92294 5.08030 5.35445 5.89693 6.01765 6.64004 6.64821 7.25599 7.36317 8.16361 8.86066 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.046823 B = 0.005159 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.851774 B = 5426.067162 C = 5578.032264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.581 5.581 3 C 0.603 3.397 4 O -0.544 6.544 5 C -0.051 4.051 6 C 0.054 3.946 7 N -0.361 5.361 8 O 0.345 5.655 9 N -0.313 5.313 10 C 0.125 3.875 11 C 0.114 3.886 12 N -0.651 5.651 13 C -0.292 4.292 14 H 0.054 0.946 15 C -0.079 4.079 16 N -0.968 5.968 17 Si 1.107 2.893 18 H -0.303 1.303 19 H -0.272 1.272 20 H -0.257 1.257 21 C 0.082 3.918 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.254 0.746 26 H 0.118 0.882 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.248 0.752 30 H 0.075 0.925 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 23.491 -0.074 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.312 5.312 3 C 0.389 3.611 4 O -0.420 6.420 5 C -0.215 4.215 6 C -0.131 4.131 7 N -0.085 5.085 8 O 0.118 5.882 9 N -0.033 5.033 10 C 0.020 3.980 11 C -0.012 4.012 12 N -0.380 5.380 13 C -0.420 4.420 14 H 0.072 0.928 15 C -0.271 4.271 16 N -0.613 5.613 17 Si 0.933 3.067 18 H -0.231 1.231 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.043 4.043 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.270 0.730 26 H 0.136 0.864 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.709 23.212 1.581 24.214 hybrid contribution 1.289 -0.739 -2.177 2.636 sum -5.420 22.473 -0.596 23.125 Atomic orbital electron populations 1.22236 0.76562 1.04485 1.03961 1.47730 1.08772 1.04413 1.70313 1.16778 0.85795 0.81484 0.77074 1.90832 1.13699 1.86568 1.50888 1.25935 0.89765 0.97416 1.08390 1.28175 1.02020 0.85380 0.97539 1.75110 0.96220 1.20667 1.16551 1.85101 1.31956 1.09381 1.61745 1.75561 1.16551 0.98762 1.12382 1.23108 0.97243 0.79725 0.97903 1.22923 1.00047 0.84357 0.93909 1.45755 1.80018 1.03371 1.08870 1.19988 1.44582 0.82484 0.94917 0.92834 1.27044 0.99936 0.94765 1.05366 1.71018 1.48826 1.13665 1.27771 0.83303 0.77918 0.73507 0.71930 1.23121 1.19885 1.18197 1.23462 0.99250 0.87693 0.93933 0.90424 0.89094 0.89575 0.72973 0.86385 0.93183 0.91643 0.94298 0.90795 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 8.20 127.77 1.05 2.45 16 2 N -0.58 -15.35 3.12 -824.30 -2.57 -17.91 16 3 C 0.60 15.75 7.69 86.92 0.67 16.41 16 4 O -0.54 -17.27 16.59 -3.74 -0.06 -17.33 16 5 C -0.05 -1.01 7.11 44.29 0.31 -0.69 16 6 C 0.05 0.81 12.63 87.31 1.10 1.91 16 7 N -0.36 -5.81 12.22 -61.42 -0.75 -6.57 16 8 O 0.35 5.69 11.65 140.85 1.64 7.33 16 9 N -0.31 -5.68 9.36 -52.06 -0.49 -6.17 16 10 C 0.12 4.15 4.55 45.55 0.21 4.36 16 11 C 0.11 4.20 8.23 83.18 0.68 4.89 16 12 N -0.65 -30.65 3.69 -737.90 -2.72 -33.37 16 13 C -0.29 -16.83 11.09 84.03 0.93 -15.90 16 14 H 0.05 3.33 8.05 -2.91 -0.02 3.31 16 15 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 16 N -0.97 -62.21 13.70 21.65 0.30 -61.91 16 17 Si 1.11 52.37 25.09 68.60 1.72 54.09 16 18 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 19 H -0.27 -11.89 6.36 99.48 0.63 -11.26 16 20 H -0.26 -10.68 6.67 99.48 0.66 -10.02 16 21 C 0.08 3.12 5.34 83.27 0.44 3.57 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.09 1.60 6.03 -2.39 -0.01 1.59 16 24 H 0.09 1.79 5.95 -2.39 -0.01 1.77 16 25 H 0.25 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.12 4.26 7.33 -2.39 -0.02 4.25 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 2.14 7.05 -2.39 -0.02 2.12 16 29 H 0.25 15.99 8.73 -92.70 -0.81 15.18 16 30 H 0.07 2.51 6.37 -2.39 -0.02 2.49 16 31 H 0.05 2.16 3.99 -2.39 -0.01 2.15 16 Total: -1.00 -70.13 263.75 3.96 -66.18 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.02 Total: 2.88 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.87 Total: 12.79 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -6.23 Total: -125.93 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 1.58 Total: -10.00 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 1.72 Total: 54.09 kcal Total: -70.13 3.96 -66.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044074809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.060 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds