Wall clock time and date at job start Sun Mar 29 2020 23:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47281 * 15.02089 * 3 2 1 5 5 C 1.39299 * 119.99642 * 180.02562 * 4 3 2 6 6 C 1.36220 * 120.30538 * 0.02562 * 5 4 3 7 7 C 1.41184 * 120.65210 * 180.02562 * 6 5 4 8 8 C 1.41183 * 119.51179 * 180.02562 * 7 6 5 9 9 H 1.08006 * 120.00153 * 25.60118 * 8 7 6 10 10 C 1.39905 * 120.00330 * 205.60063 * 8 7 6 11 11 N 1.30852 * 119.99736 * 18.21530 * 10 8 7 12 12 Si 1.86799 * 120.00380 * 198.21568 * 10 8 7 13 13 H 1.48503 * 109.47149 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47370 * 120.00107 * 12 10 8 15 15 H 1.48499 * 109.47291 * 240.00161 * 12 10 8 16 16 C 1.39978 * 120.97991 * 359.97438 * 7 6 5 17 17 C 1.39877 * 120.01989 * 359.97438 * 16 7 6 18 18 C 1.40850 * 121.16412 * 179.97438 * 17 16 7 19 19 C 1.36191 * 119.60715 * 180.02562 * 18 17 16 20 20 C 1.39253 * 120.95443 * 0.02898 * 19 18 17 21 21 C 1.36526 * 120.98983 * 0.23096 * 20 19 18 22 22 C 1.39887 * 119.72778 * 359.48805 * 21 20 19 23 23 H 1.09000 * 109.47258 * 255.01762 * 3 2 1 24 24 H 1.09007 * 109.47083 * 135.01902 * 3 2 1 25 25 H 0.96995 * 119.99711 * 0.02562 * 4 3 2 26 26 H 1.08003 * 119.67817 * 359.97438 * 6 5 4 27 27 H 0.97001 * 119.99322 * 180.02562 * 11 10 8 28 28 H 1.07997 * 119.99253 * 180.02562 * 16 7 6 29 29 H 1.08003 * 120.19942 * 0.04966 * 18 17 16 30 30 H 1.08001 * 119.52762 * 179.97438 * 19 18 17 31 31 H 1.07995 * 119.50484 * 179.97438 * 20 19 18 32 32 H 1.08004 * 120.14110 * 179.74324 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3331 -0.3580 5 6 4.4666 -1.5784 -0.4234 6 6 5.3568 -0.5828 -0.1552 7 6 6.7465 -0.8231 -0.2199 8 6 7.6477 0.2262 0.0633 9 1 7.3430 1.0422 0.7020 10 6 8.9354 0.2092 -0.4834 11 7 9.1985 -0.5527 -1.5142 12 14 10.2792 1.2739 0.2582 13 1 9.7286 2.0371 1.4070 14 1 11.3936 0.4107 0.7252 15 1 10.7835 2.2210 -0.7684 16 6 7.2442 -2.0865 -0.5595 17 6 6.3611 -3.1342 -0.8406 18 6 6.8355 -4.4148 -1.1854 19 6 5.9472 -5.4117 -1.4533 20 6 4.5748 -5.1839 -1.3921 21 6 4.0803 -3.9537 -1.0664 22 6 4.9613 -2.9059 -0.7786 23 1 2.9712 0.2665 0.9927 24 1 2.9710 0.7278 -0.7265 25 1 2.4670 -2.0454 -0.5494 26 1 4.9960 0.4004 0.1086 27 1 10.0914 -0.5648 -1.8929 28 1 8.3104 -2.2527 -0.6038 29 1 7.8974 -4.6051 -1.2366 30 1 6.3124 -6.3931 -1.7180 31 1 3.8914 -5.9913 -1.6095 32 1 3.0133 -3.7912 -1.0270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:55 Heat of formation + Delta-G solvation = 51.348130 kcal Electronic energy + Delta-G solvation = -16994.055322 eV Core-core repulsion = 14304.310371 eV Total energy + Delta-G solvation = -2689.744951 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.096 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58298 -38.40521 -37.33026 -36.52106 -34.35015 -32.25671 -31.21511 -29.57757 -27.86250 -26.65352 -23.51065 -23.10884 -21.65820 -19.60755 -19.25905 -17.73905 -17.26095 -16.69394 -16.60695 -16.10187 -15.67710 -15.57660 -14.64357 -14.59780 -14.18083 -14.10273 -13.82862 -13.66003 -13.37310 -13.26068 -13.02037 -12.73741 -12.49219 -12.36344 -11.98675 -11.80158 -11.38994 -11.13681 -11.08473 -10.53389 -9.57745 -9.13367 -8.57469 -7.70756 -6.18288 0.29217 0.70639 1.34015 1.42104 1.46337 1.58982 1.65395 1.79486 2.25088 2.45303 2.64700 2.99934 3.15064 3.96192 4.16578 4.23828 4.40220 4.54504 4.56635 4.71517 4.83873 5.03565 5.08920 5.15794 5.28949 5.36858 5.50347 5.73120 5.81700 5.93361 5.95962 6.18376 6.33656 6.36649 6.47251 6.57322 6.79778 6.92792 7.04594 7.18575 8.39044 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.007510 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.728484 B = 3727.281112 C = 5440.031732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.233 3.767 3 C 0.227 3.773 4 N -0.742 5.742 5 C 0.234 3.766 6 C -0.260 4.260 7 C 0.117 3.883 8 C -0.481 4.481 9 H 0.086 0.914 10 C 0.035 3.965 11 N -0.814 5.814 12 Si 0.976 3.024 13 H -0.252 1.252 14 H -0.272 1.272 15 H -0.268 1.268 16 C -0.279 4.279 17 C 0.005 3.995 18 C -0.175 4.175 19 C -0.101 4.101 20 C -0.201 4.201 21 C -0.072 4.072 22 C -0.183 4.183 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.403 0.597 26 H 0.126 0.874 27 H 0.285 0.715 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 -0.914 1.765 5.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.085 4.085 3 C 0.101 3.899 4 N -0.376 5.376 5 C 0.132 3.868 6 C -0.285 4.285 7 C 0.114 3.886 8 C -0.510 4.510 9 H 0.104 0.896 10 C -0.181 4.181 11 N -0.439 5.439 12 Si 0.797 3.203 13 H -0.175 1.175 14 H -0.197 1.197 15 H -0.193 1.193 16 C -0.301 4.301 17 C 0.004 3.996 18 C -0.194 4.194 19 C -0.119 4.119 20 C -0.219 4.219 21 C -0.090 4.090 22 C -0.186 4.186 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.239 0.761 26 H 0.144 0.856 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.111 -0.760 1.645 7.338 hybrid contribution 1.263 0.094 -0.061 1.268 sum -5.847 -0.666 1.584 6.094 Atomic orbital electron populations 1.81259 1.14056 1.08016 1.10794 1.29221 0.94990 0.92760 0.91498 1.18834 0.78504 0.87080 1.05471 1.43999 1.02996 1.11501 1.79066 1.18100 0.82934 0.91961 0.93792 1.20493 0.92307 0.98585 1.17155 1.17544 0.91880 0.92206 0.86959 1.19952 0.97298 1.07014 1.26730 0.89586 1.26755 1.01649 0.96497 0.93234 1.69977 1.22944 1.33893 1.17084 0.85243 0.77297 0.78278 0.79431 1.17509 1.19715 1.19341 1.20872 0.97375 0.92949 1.18858 1.18040 0.92593 0.93882 0.95103 1.20999 0.99007 0.93511 1.05857 1.20878 0.93707 0.98571 0.98701 1.20703 0.95200 0.97683 1.08360 1.20788 0.98460 0.92633 0.97135 1.18541 0.92773 0.93333 1.13969 0.85675 0.86021 0.76123 0.85573 0.90449 0.89298 0.87832 0.85134 0.84755 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.34 18.54 20.00 0.37 -11.97 16 2 C 0.23 5.01 15.55 89.44 1.39 6.40 16 3 C 0.23 4.41 5.37 84.57 0.45 4.86 16 4 N -0.74 -19.51 5.66 -344.41 -1.95 -21.46 16 5 C 0.23 8.67 6.78 39.51 0.27 8.93 16 6 C -0.26 -10.78 8.94 22.52 0.20 -10.58 16 7 C 0.12 5.92 5.55 -21.41 -0.12 5.80 16 8 C -0.48 -24.06 8.99 23.40 0.21 -23.85 16 9 H 0.09 4.00 7.91 -2.91 -0.02 3.98 16 10 C 0.03 1.68 5.09 85.24 0.43 2.12 16 11 N -0.81 -42.06 11.00 21.82 0.24 -41.82 16 12 Si 0.98 36.62 29.60 68.60 2.03 38.65 16 13 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 14 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 15 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 16 C -0.28 -14.69 8.39 23.09 0.19 -14.49 16 17 C 0.00 0.22 5.74 -21.32 -0.12 0.09 16 18 C -0.18 -7.43 9.78 22.43 0.22 -7.22 16 19 C -0.10 -3.53 9.95 22.04 0.22 -3.31 16 20 C -0.20 -6.52 9.96 22.11 0.22 -6.30 16 21 C -0.07 -2.45 9.54 22.27 0.21 -2.24 16 22 C -0.18 -7.55 5.90 -19.93 -0.12 -7.67 16 23 H 0.13 2.05 7.93 -2.39 -0.02 2.03 16 24 H 0.12 2.10 7.94 -2.38 -0.02 2.08 16 25 H 0.40 9.54 6.69 -92.71 -0.62 8.92 16 26 H 0.13 4.41 6.64 -2.91 -0.02 4.39 16 27 H 0.28 13.40 8.30 -92.71 -0.77 12.63 16 28 H 0.09 5.05 6.15 -2.91 -0.02 5.03 16 29 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 32 H 0.13 3.46 6.53 -2.91 -0.02 3.44 16 Total: -1.00 -61.81 283.91 4.90 -56.91 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.54 Total: 27.15 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 3.67 Total: -47.45 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.34 Total: -75.26 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -61.81 4.90 -56.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.257 kcal (2) G-P(sol) polarization free energy of solvation -61.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds