Wall clock time and date at job start Sun Mar 29 2020 22:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00133 * 2 1 4 4 H 1.48497 * 109.47354 * 270.00383 * 3 2 1 5 5 H 1.48504 * 109.46878 * 30.00187 * 3 2 1 6 6 H 1.48496 * 109.47327 * 149.99820 * 3 2 1 7 7 C 1.37877 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00115 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99958 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47180 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46852 * 179.97438 * 11 10 9 13 13 C 1.39003 * 119.99965 * 179.97438 * 12 11 10 14 14 N 1.32690 * 120.09204 * 5.79347 * 13 12 11 15 15 C 1.32216 * 119.90850 * 180.02562 * 14 13 12 16 16 C 1.38199 * 120.11001 * 359.97438 * 15 14 13 17 17 N 1.32244 * 120.19057 * 0.02562 * 16 15 14 18 18 C 1.31954 * 120.08300 * 359.97438 * 17 16 15 19 19 N 1.48000 * 120.05353 * 179.97438 * 18 17 16 20 20 O 1.21799 * 119.99931 * 353.74496 * 19 18 17 21 21 O 1.21799 * 120.00236 * 173.73557 * 19 18 17 22 22 H 0.96991 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47144 * 59.99502 * 9 7 2 24 24 H 1.09001 * 109.47253 * 299.99395 * 9 7 2 25 25 H 1.09001 * 109.47280 * 59.99267 * 10 9 7 26 26 H 1.09001 * 109.46577 * 299.99886 * 10 9 7 27 27 H 1.08996 * 109.47256 * 59.99534 * 11 10 9 28 28 H 1.08997 * 109.46720 * 299.99268 * 11 10 9 29 29 H 0.96996 * 120.00428 * 359.97438 * 12 11 10 30 30 H 1.08001 * 119.94229 * 180.27543 * 15 14 13 31 31 H 1.08003 * 119.90603 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6365 0.0012 12 7 6.0399 -4.0177 0.0017 13 6 7.4065 -4.2717 0.0022 14 7 8.2693 -3.2703 0.1182 15 6 9.5684 -3.5161 0.1179 16 6 10.0286 -4.8136 -0.0026 17 7 9.1724 -5.8148 -0.1184 18 6 7.8742 -5.5782 -0.1189 19 7 6.9166 -6.6991 -0.2492 20 8 7.3239 -7.8255 -0.4701 21 8 5.7212 -6.4952 -0.1354 22 1 -0.4850 0.8400 0.0004 23 1 3.8746 -0.6807 0.8904 24 1 3.8753 -0.6797 -0.8895 25 1 3.6586 -3.1503 -0.8902 26 1 3.6579 -3.1505 0.8897 27 1 5.9143 -2.1230 0.8915 28 1 5.9156 -2.1225 -0.8884 29 1 5.4096 -4.7550 0.0016 30 1 10.2711 -2.7019 0.2167 31 1 11.0905 -5.0106 -0.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426733.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:33 Heat of formation + Delta-G solvation = 53.475216 kcal Electronic energy + Delta-G solvation = -17695.596746 eV Core-core repulsion = 14595.094769 eV Total energy + Delta-G solvation = -3100.501977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.59619 -41.27790 -37.58379 -36.46000 -34.79526 -33.93750 -32.23173 -30.65555 -27.60373 -27.29782 -24.40370 -23.95827 -22.41609 -20.54799 -19.90727 -19.23145 -18.21526 -17.87882 -17.66422 -16.78191 -15.81066 -15.74895 -14.95541 -14.76786 -14.45113 -14.08877 -12.84708 -12.77553 -12.33960 -12.06384 -11.93699 -11.69942 -11.56654 -11.34298 -11.19168 -11.13608 -10.76931 -10.20554 -10.01025 -9.85486 -9.74420 -9.30033 -8.61271 -8.50569 -6.10925 -4.10418 -0.52958 0.57264 0.94454 0.99513 2.57835 3.02291 3.25228 3.33189 3.35122 3.48125 3.55193 3.98245 4.34583 4.38334 4.61791 5.22006 5.25169 5.38305 5.40936 5.77613 5.97683 6.21544 6.27463 6.34952 6.59245 6.64910 6.79058 7.11717 7.24904 7.38961 7.58094 7.68929 8.45137 8.93403 9.50247 11.02345 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.004449 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.402300 B = 6292.448263 C = 7120.141769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.117 4.117 11 C 0.108 3.892 12 N -0.666 5.666 13 C 0.427 3.573 14 N -0.484 5.484 15 C 0.170 3.830 16 C -0.010 4.010 17 N -0.343 5.343 18 C 0.023 3.977 19 N 0.053 4.947 20 O -0.117 6.117 21 O -0.190 6.190 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.430 0.570 30 H 0.192 0.808 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.646 -6.782 0.322 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.155 4.155 11 C -0.014 4.014 12 N -0.303 5.303 13 C 0.181 3.819 14 N -0.209 5.209 15 C 0.001 3.999 16 C -0.179 4.179 17 N -0.061 5.061 18 C -0.204 4.204 19 N 0.567 4.433 20 O -0.343 6.343 21 O -0.385 6.385 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.281 0.719 30 H 0.209 0.791 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 21.405 -5.981 0.394 22.229 hybrid contribution 0.043 0.381 -0.049 0.387 sum 21.449 -5.600 0.346 22.170 Atomic orbital electron populations 1.69909 1.06314 1.27007 1.50702 1.25028 0.94746 0.99190 0.94444 0.86774 0.80332 0.83606 0.78540 1.20245 1.21301 1.19000 1.21079 0.89163 0.94664 1.51338 0.90855 1.19484 0.97502 0.90927 0.96649 1.21767 0.89735 1.01506 1.02498 1.22008 0.97079 0.79700 1.02639 1.46590 1.01494 1.12998 1.69255 1.18926 0.88656 0.86808 0.87521 1.68577 1.03110 1.30587 1.18608 1.24174 0.91643 0.98233 0.85856 1.23476 1.00376 0.87915 1.06156 1.66937 0.99750 1.36936 1.02467 1.21626 0.90219 0.84881 1.23712 1.43113 1.00749 1.01573 0.97817 1.94554 1.83203 1.07559 1.48944 1.94244 0.98146 1.88785 1.57291 0.92619 0.96248 0.96716 0.91655 0.91601 0.90635 0.90945 0.71885 0.79085 0.79419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.17 4.04 -27.88 -0.11 -0.29 16 10 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.11 1.63 5.72 -4.04 -0.02 1.61 16 12 N -0.67 -9.51 5.59 -60.31 -0.34 -9.85 16 13 C 0.43 5.70 7.47 -154.71 -1.15 4.55 16 14 N -0.48 -5.48 9.75 -12.24 -0.12 -5.60 16 15 C 0.17 1.17 11.22 -17.40 -0.20 0.97 16 16 C -0.01 -0.07 11.21 -17.39 -0.19 -0.27 16 17 N -0.34 -4.05 10.21 -9.94 -0.10 -4.15 16 18 C 0.02 0.31 7.79 -145.74 -1.14 -0.82 16 19 N 0.05 0.82 4.45 33.08 0.15 0.96 16 20 O -0.12 -1.83 19.05 -29.46 -0.56 -2.40 16 21 O -0.19 -2.96 15.73 -29.46 -0.46 -3.42 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 24 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.43 6.25 4.92 -41.13 -0.20 6.05 16 30 H 0.19 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.19 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 279.47 15.07 4.21 4.21 Total: -1.00 -32.71 279.47 -7.60 -40.31 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.09 Total: -0.29 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.39 Total: -9.58 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.36 Total: -45.28 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -1.02 Total: -5.81 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.71 -7.60 -40.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426733.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.781 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds