Wall clock time and date at job start Sun Mar 29 2020 23:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42896 * 112.94066 * 48.43519 * 9 7 2 11 11 C 1.53938 * 113.73589 * 276.72885 * 9 7 2 12 12 N 1.47958 * 86.18121 * 221.92329 * 11 9 7 13 13 C 1.46903 * 111.00224 * 137.58241 * 12 11 9 14 14 C 1.50704 * 109.47018 * 70.63784 * 13 12 11 15 15 C 1.38142 * 119.60242 * 94.72792 * 14 13 12 16 16 C 1.38698 * 119.22318 * 179.77016 * 15 14 13 17 17 C 1.38545 * 118.45330 * 0.49553 * 16 15 14 18 18 C 1.38524 * 119.13901 * 359.74634 * 17 16 15 19 19 F 1.35102 * 119.64983 * 179.97438 * 18 17 16 20 20 N 1.31910 * 119.59902 * 274.99889 * 14 13 12 21 21 C 1.47957 * 90.76493 * 24.68742 * 12 11 9 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 0.96709 * 114.00030 * 309.66214 * 10 9 7 24 24 H 1.09003 * 113.75836 * 336.24227 * 11 9 7 25 25 H 1.08999 * 113.75908 * 107.60037 * 11 9 7 26 26 H 1.08997 * 109.47135 * 190.63735 * 13 12 11 27 27 H 1.08999 * 109.46521 * 310.64012 * 13 12 11 28 28 H 1.08008 * 120.38499 * 359.97438 * 15 14 13 29 29 H 1.08005 * 120.77932 * 180.24028 * 16 15 14 30 30 H 1.08001 * 120.43382 * 179.72998 * 17 16 15 31 31 H 1.08999 * 113.76060 * 220.99233 * 21 12 11 32 32 H 1.09003 * 113.75638 * 89.62817 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2161 -2.5447 -0.9847 11 6 0.7988 -2.9535 1.3990 12 7 1.2180 -4.3109 0.9854 13 6 1.9380 -4.9927 2.0693 14 6 0.9716 -5.3437 3.1712 15 6 0.3953 -6.5989 3.1992 16 6 -0.4893 -6.9152 4.2195 17 6 -0.7707 -5.9495 5.1723 18 6 -0.1590 -4.7102 5.0776 19 9 -0.4263 -3.7607 6.0008 20 7 0.6821 -4.4469 4.0942 21 6 2.1616 -3.7403 -0.0011 22 1 -0.4850 0.8401 0.0004 23 1 -0.3760 -1.7802 -0.9686 24 1 1.3962 -2.5374 2.2102 25 1 -0.2739 -2.8571 1.5667 26 1 2.3964 -5.9035 1.6843 27 1 2.7125 -4.3337 2.4616 28 1 0.6334 -7.3265 2.4373 29 1 -0.9513 -7.8903 4.2680 30 1 -1.4581 -6.1601 5.9782 31 1 2.1778 -4.2727 -0.9521 32 1 3.1577 -3.5544 0.4006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169626227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:59 Heat of formation + Delta-G solvation = -39.075218 kcal Electronic energy + Delta-G solvation = -18314.240152 eV Core-core repulsion = 15189.804925 eV Total energy + Delta-G solvation = -3124.435227 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.05077 -41.43829 -40.34631 -36.32965 -34.13221 -33.77571 -32.93807 -29.86758 -27.71504 -26.88504 -24.86358 -24.42584 -22.68986 -20.49127 -19.30479 -18.81356 -17.98488 -17.25535 -17.11637 -17.05799 -16.75719 -15.98950 -15.77491 -15.59436 -14.90752 -14.29418 -14.16307 -14.05645 -13.69809 -13.67441 -13.34802 -13.10549 -12.79682 -12.54274 -12.47144 -12.25226 -11.99885 -11.27116 -10.97910 -10.66258 -10.62982 -10.21320 -9.88031 -9.61995 -8.26101 -6.43901 -0.09752 0.17851 1.40877 1.41867 1.50273 2.35351 2.45632 2.60343 2.94997 3.21928 3.43009 3.68298 3.98834 4.05053 4.11482 4.22575 4.25681 4.44746 4.49944 4.67668 4.69338 4.78496 4.90000 5.00437 5.11100 5.12339 5.38557 5.39730 5.66480 5.73586 5.96174 6.22619 6.61134 6.71502 7.28818 7.50140 8.78743 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.026458 B = 0.006119 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.019122 B = 4575.059843 C = 5155.897752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.024 3.976 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.560 4.560 8 H 0.067 0.933 9 C 0.213 3.787 10 O -0.583 6.583 11 C 0.017 3.983 12 N -0.473 5.473 13 C 0.063 3.937 14 C 0.152 3.848 15 C -0.159 4.159 16 C -0.037 4.037 17 C -0.187 4.187 18 C 0.270 3.730 19 F -0.130 7.130 20 N -0.550 5.550 21 C 0.023 3.977 22 H 0.273 0.727 23 H 0.381 0.619 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.126 0.874 27 H 0.045 0.955 28 H 0.173 0.827 29 H 0.195 0.805 30 H 0.178 0.822 31 H 0.088 0.912 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -14.158 8.291 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.598 4.598 8 H 0.085 0.915 9 C 0.172 3.828 10 O -0.394 6.394 11 C -0.113 4.113 12 N -0.196 5.196 13 C -0.065 4.065 14 C 0.015 3.985 15 C -0.180 4.180 16 C -0.062 4.062 17 C -0.208 4.208 18 C 0.116 3.884 19 F -0.110 7.110 20 N -0.266 5.266 21 C -0.105 4.105 22 H 0.083 0.917 23 H 0.235 0.765 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.144 0.856 27 H 0.063 0.937 28 H 0.191 0.809 29 H 0.212 0.788 30 H 0.195 0.805 31 H 0.106 0.894 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.409 -14.244 7.948 16.316 hybrid contribution 0.157 1.932 0.891 2.133 sum 0.566 -12.312 8.838 15.166 Atomic orbital electron populations 1.69433 1.07341 1.28645 1.50850 1.25860 0.95808 1.02953 0.92961 0.85457 0.78340 0.78013 0.78926 1.20579 1.19769 1.19142 1.21920 0.93934 0.91908 1.52084 0.91506 1.20198 0.85703 0.92303 0.84580 1.86001 1.45623 1.49900 1.57879 1.24230 0.98127 0.88950 1.00007 1.68553 1.26640 1.15284 1.09079 1.21727 0.93423 1.01637 0.89752 1.20995 0.95815 0.89964 0.91765 1.22363 0.97868 0.97027 1.00710 1.22028 0.93398 1.00487 0.90294 1.22183 1.03088 0.91516 1.04030 1.18627 0.95797 0.86534 0.87398 1.91573 1.91842 1.65043 1.62495 1.66637 1.17286 1.38332 1.04341 1.24082 0.95081 0.94542 0.96807 0.91730 0.76472 0.93117 0.94790 0.85635 0.93678 0.80933 0.78838 0.80480 0.89359 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 11.09 21.45 0.24 -51.88 16 2 C 0.02 1.29 5.40 84.66 0.46 1.75 16 3 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.56 -30.96 8.62 25.60 0.22 -30.74 16 8 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.22 1.44 -10.89 -0.02 11.20 16 10 O -0.58 -32.87 13.48 -148.98 -2.01 -34.88 16 11 C 0.02 0.84 6.50 86.41 0.56 1.40 16 12 N -0.47 -19.66 6.25 -915.44 -5.72 -25.38 16 13 C 0.06 2.08 5.13 85.56 0.44 2.52 16 14 C 0.15 4.83 5.96 42.53 0.25 5.08 16 15 C -0.16 -3.54 9.72 22.36 0.22 -3.32 16 16 C -0.04 -0.63 10.17 22.45 0.23 -0.40 16 17 C -0.19 -3.97 10.09 22.41 0.23 -3.75 16 18 C 0.27 8.58 8.41 84.73 0.71 9.30 16 19 F -0.13 -4.37 17.29 44.97 0.78 -3.59 16 20 N -0.55 -20.45 9.83 -184.94 -1.82 -22.27 16 21 C 0.02 0.99 7.36 86.41 0.64 1.63 16 22 H 0.27 14.61 8.31 -92.71 -0.77 13.83 16 23 H 0.38 22.25 6.46 -74.05 -0.48 21.77 16 24 H 0.05 2.68 7.73 -2.39 -0.02 2.66 16 25 H 0.03 1.87 8.14 -2.39 -0.02 1.86 16 26 H 0.13 3.11 8.04 -2.39 -0.02 3.09 16 27 H 0.04 1.60 7.69 -2.39 -0.02 1.58 16 28 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.08 3.22 7.74 -2.39 -0.02 3.20 16 Total: -1.00 -68.19 281.84 -1.91 -70.09 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.67 Total: 28.05 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 3.94 Total: -5.34 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -7.30 Total: -99.53 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -2.01 Total: -34.88 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.59 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.19 -1.91 -70.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169626227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.016 kcal (2) G-P(sol) polarization free energy of solvation -68.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds