Wall clock time and date at job start Sun Mar 29 2020 23:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00624 * 2 1 4 4 H 1.48503 * 109.47509 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47228 * 299.99929 * 3 2 1 6 6 H 1.48495 * 109.47259 * 59.99896 * 3 2 1 7 7 C 1.37881 * 119.99326 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00370 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47328 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00203 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.63055 * 324.76182 * 12 11 10 14 14 C 1.53613 * 109.77177 * 204.35488 * 12 11 10 15 15 C 1.53026 * 109.50355 * 169.81898 * 14 12 11 16 16 C 1.52131 * 108.72767 * 51.26753 * 15 14 12 17 17 N 1.32527 * 124.19801 * 162.45620 * 16 15 14 18 18 C 1.28676 * 117.87769 * 180.02562 * 17 16 15 19 19 S 1.70908 * 110.13949 * 359.97438 * 18 17 16 20 20 C 1.34613 * 122.64835 * 342.47680 * 16 15 14 21 21 C 1.51001 * 125.21990 * 359.93079 * 20 16 15 22 22 H 0.97012 * 119.99622 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47088 * 59.99738 * 9 7 2 24 24 H 1.09006 * 109.47226 * 299.99738 * 9 7 2 25 25 H 1.09001 * 109.46860 * 59.99993 * 10 9 7 26 26 H 1.08994 * 109.46951 * 299.99870 * 10 9 7 27 27 H 1.00905 * 111.00483 * 303.95587 * 11 10 9 28 28 H 1.08998 * 109.40283 * 49.83392 * 14 12 11 29 29 H 1.09002 * 109.49891 * 289.85888 * 14 12 11 30 30 H 1.09000 * 109.59268 * 291.50219 * 15 14 12 31 31 H 1.08993 * 109.72307 * 171.11384 * 15 14 12 32 32 H 1.07993 * 124.92795 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.62100 * 103.66322 * 21 20 16 34 34 H 1.08998 * 109.61655 * 224.02475 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3963 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5104 -4.9343 0.0001 12 6 2.4347 -6.0760 -0.0005 13 1 3.3164 -5.8330 -0.5935 14 6 1.7377 -7.3086 -0.5961 15 6 2.7683 -8.4155 -0.8292 16 6 3.5577 -8.6261 0.4541 17 7 4.2833 -9.7042 0.7138 18 6 4.9027 -9.7556 1.8405 19 16 4.6011 -8.3359 2.7430 20 6 3.5834 -7.7187 1.4481 21 6 2.8563 -6.3954 1.4382 22 1 -0.4850 0.8402 0.0004 23 1 0.6238 -2.5567 -0.8902 24 1 0.6245 -2.5571 0.8897 25 1 2.8716 -3.6045 0.8895 26 1 2.8716 -3.6045 -0.8905 27 1 0.8741 -4.9842 0.7817 28 1 1.2731 -7.0389 -1.5445 29 1 0.9732 -7.6636 0.0950 30 1 3.4458 -8.1211 -1.6308 31 1 2.2597 -9.3402 -1.1014 32 1 5.5236 -10.5762 2.1680 33 1 1.9725 -6.4586 2.0731 34 1 3.5174 -5.6118 1.8083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173128697.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:26 Heat of formation + Delta-G solvation = 23.610059 kcal Electronic energy + Delta-G solvation = -15808.643826 eV Core-core repulsion = 13253.140013 eV Total energy + Delta-G solvation = -2555.503813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25282 -37.48150 -34.37166 -32.63672 -30.84155 -29.80387 -27.50043 -24.72618 -24.05145 -23.06770 -21.14951 -20.58790 -18.49167 -18.27358 -16.35466 -15.60069 -15.25755 -14.94069 -14.41010 -14.34610 -14.08095 -13.93833 -13.21931 -12.81105 -12.67613 -12.31522 -12.05379 -11.82452 -11.51537 -11.14520 -10.98070 -10.82570 -10.62473 -10.48754 -10.04948 -9.72878 -9.39241 -9.32104 -9.14854 -8.75887 -8.37574 -7.88254 -6.01591 -4.04154 0.61248 1.23868 1.63758 2.66201 3.30122 3.37691 3.41513 3.99267 4.37459 4.53026 4.76878 4.82102 4.93183 5.04369 5.31028 5.34719 5.43850 5.48065 5.50022 5.69417 5.82758 6.02100 6.08963 6.19821 6.25639 6.33703 6.42059 6.94156 7.42927 7.59942 7.69654 7.79020 7.91121 8.05514 8.41294 9.03323 9.59899 11.09841 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039096 B = 0.003947 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.022724 B = 7092.367438 C = 7530.179690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.681 5.681 12 C 0.093 3.907 13 H 0.080 0.920 14 C -0.109 4.109 15 C -0.036 4.036 16 C 0.056 3.944 17 N -0.470 5.470 18 C 0.014 3.986 19 S 0.104 5.896 20 C -0.203 4.203 21 C -0.074 4.074 22 H 0.260 0.740 23 H 0.026 0.974 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.338 0.662 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.197 0.803 33 H 0.083 0.917 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.354 -18.460 3.990 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.311 5.311 12 C -0.019 4.019 13 H 0.098 0.902 14 C -0.147 4.147 15 C -0.077 4.077 16 C -0.074 4.074 17 N -0.183 5.183 18 C -0.284 4.284 19 S 0.358 5.642 20 C -0.325 4.325 21 C -0.115 4.115 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.214 0.786 33 H 0.102 0.898 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.533 -18.471 3.945 20.334 hybrid contribution 0.524 0.949 0.416 1.161 sum 8.057 -17.522 4.361 19.773 Atomic orbital electron populations 1.69983 1.06034 1.26498 1.50686 1.25000 0.94838 0.99232 0.95282 0.86539 0.80080 0.83790 0.77602 1.19775 1.20952 1.21030 1.21207 0.93011 0.91004 1.50827 0.92725 1.19079 0.94028 0.90437 0.97768 1.22219 0.97038 0.88378 0.98711 1.60700 1.18972 1.01827 1.49566 1.21726 0.95753 0.91728 0.92708 0.90157 1.21671 0.97182 0.93289 1.02601 1.20380 0.96233 0.99704 0.91349 1.21066 0.99412 0.88710 0.98230 1.65881 1.08835 1.25097 1.18447 1.28085 1.04360 1.02371 0.93600 1.83984 1.43537 1.14762 1.21924 1.26081 1.06018 1.03068 0.97285 1.21098 0.99224 0.90562 1.00663 0.93030 0.95572 0.96804 0.96571 0.92235 0.84398 0.89585 0.91745 0.89958 0.89866 0.78638 0.89834 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 5.23 -27.88 -0.15 0.48 16 10 C 0.06 1.31 5.43 -3.83 -0.02 1.29 16 11 N -0.68 -11.39 6.27 -106.24 -0.67 -12.06 16 12 C 0.09 1.28 2.50 -67.25 -0.17 1.11 16 13 H 0.08 1.17 7.78 -51.93 -0.40 0.76 16 14 C -0.11 -1.29 5.51 -26.40 -0.15 -1.44 16 15 C -0.04 -0.41 6.30 -27.16 -0.17 -0.58 16 16 C 0.06 0.72 6.78 -82.87 -0.56 0.16 16 17 N -0.47 -6.03 10.51 -11.16 -0.12 -6.15 16 18 C 0.01 0.15 12.22 51.44 0.63 0.78 16 19 S 0.10 1.07 23.21 -107.50 -2.50 -1.42 16 20 C -0.20 -2.53 6.39 -35.44 -0.23 -2.76 16 21 C -0.07 -0.94 5.54 -27.59 -0.15 -1.09 16 22 H 0.26 7.32 8.31 -40.81 -0.34 6.98 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.32 7.70 -51.93 -0.40 -0.08 16 26 H 0.06 1.22 8.06 -51.93 -0.42 0.81 16 27 H 0.34 5.43 8.35 -39.29 -0.33 5.10 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 34 H 0.08 1.06 7.79 -51.93 -0.40 0.66 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -30.74 295.12 -9.35 -40.10 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.87 Total: 0.04 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.37 Total: -15.48 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.05 Total: -44.21 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.74 -9.35 -40.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173128697.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.709 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds