Wall clock time and date at job start Sun Mar 29 2020 23:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38344 * 120.04542 * 2 1 4 4 F 1.35099 * 119.99288 * 359.95271 * 3 2 1 5 5 C 1.38501 * 120.01904 * 180.23264 * 3 2 1 6 6 C 1.38263 * 120.11428 * 359.48845 * 5 3 2 7 7 C 1.38103 * 120.09652 * 0.50947 * 6 5 3 8 8 C 1.38818 * 120.04780 * 179.97438 * 2 1 3 9 9 N 1.39902 * 120.05738 * 0.04451 * 8 2 1 10 10 C 1.34778 * 120.00126 * 204.76351 * 9 8 2 11 11 O 1.21592 * 119.99432 * 5.71198 * 10 9 8 12 12 N 1.34771 * 120.00044 * 185.71190 * 10 9 8 13 13 C 1.46498 * 120.00042 * 0.02562 * 12 10 9 14 14 C 1.37165 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.08004 * 119.99825 * 24.95868 * 14 12 10 16 16 C 1.38885 * 120.00236 * 204.95220 * 14 12 10 17 17 N 1.31469 * 119.99823 * 5.28886 * 16 14 12 18 18 Si 1.86795 * 120.00094 * 185.27831 * 16 14 12 19 19 H 1.48497 * 109.47424 * 60.00432 * 18 16 14 20 20 H 1.48504 * 109.46930 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47391 * 300.00432 * 18 16 14 22 22 H 1.09000 * 109.46800 * 90.00338 * 1 2 3 23 23 H 1.09004 * 109.46731 * 210.00084 * 1 2 3 24 24 H 1.08992 * 109.47029 * 330.00011 * 1 2 3 25 25 H 1.07997 * 119.94122 * 179.72476 * 5 3 2 26 26 H 1.07994 * 119.95415 * 180.23070 * 6 5 3 27 27 H 1.07996 * 120.01147 * 179.72238 * 7 6 5 28 28 H 0.97001 * 119.99983 * 24.76695 * 9 8 2 29 29 H 1.09000 * 109.46978 * 94.78161 * 13 12 10 30 30 H 1.09004 * 109.47154 * 214.77622 * 13 12 10 31 31 H 1.08996 * 109.47661 * 334.78088 * 13 12 10 32 32 H 0.97003 * 120.00100 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1975 0.0000 4 9 1.5251 2.3680 -0.0010 5 6 3.5848 1.1969 -0.0049 6 6 4.2779 0.0006 0.0009 7 6 3.5913 -1.1976 0.0010 8 6 2.2022 -1.2016 0.0005 9 7 1.5049 -2.4145 0.0001 10 6 2.0875 -3.5270 0.4895 11 8 3.1768 -3.4572 1.0254 12 7 1.4628 -4.7166 0.3849 13 6 0.1507 -4.8006 -0.2613 14 6 2.0556 -5.8486 0.8834 15 1 2.7790 -5.7725 1.6818 16 6 1.7255 -7.0927 0.3616 17 7 0.9250 -7.1782 -0.6777 18 14 2.4192 -8.6444 1.1364 19 1 1.9880 -8.7247 2.5552 20 1 1.9190 -9.8322 0.3986 21 1 3.9023 -8.6100 1.0710 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 4.1242 2.1325 -0.0094 26 1 5.3579 0.0032 0.0009 27 1 4.1342 -2.1313 0.0010 28 1 0.6021 -2.4548 -0.3524 29 1 0.2789 -5.0654 -1.3108 30 1 -0.4505 -5.5625 0.2349 31 1 -0.3525 -3.8364 -0.1887 32 1 0.6941 -8.0471 -1.0419 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189039113.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:49 Heat of formation + Delta-G solvation = -30.382269 kcal Electronic energy + Delta-G solvation = -18316.510348 eV Core-core repulsion = 15192.452076 eV Total energy + Delta-G solvation = -3124.058272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.70433 -40.06840 -38.10459 -35.03275 -34.17296 -32.16534 -31.57710 -28.96960 -26.79636 -26.33637 -24.60373 -22.46850 -21.35464 -19.73575 -18.18027 -17.14497 -16.92112 -15.85902 -15.54760 -15.47215 -15.03935 -14.80006 -14.36016 -13.79437 -13.35839 -13.22414 -13.05115 -12.70583 -12.47098 -12.19056 -11.74773 -11.48925 -11.38846 -11.23221 -11.00143 -10.92215 -10.45711 -10.36425 -9.92152 -9.07124 -8.88360 -8.33451 -7.86652 -7.53435 -6.33572 -3.94820 1.47125 1.55645 3.18388 3.22395 3.24115 3.51199 3.80071 4.19230 4.28468 4.57493 4.93248 5.03896 5.08892 5.18111 5.29187 5.60564 5.66511 5.70745 5.86094 6.03100 6.10022 6.27760 6.38170 6.61055 6.75850 6.77741 6.96475 7.11835 7.43425 7.46549 7.53207 8.24847 8.54402 9.10262 9.35993 9.90416 10.70631 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.043766 B = 0.005290 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.609591 B = 5291.612884 C = 5779.953069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.176 4.176 3 C 0.114 3.886 4 F -0.144 7.144 5 C -0.191 4.191 6 C -0.076 4.076 7 C -0.142 4.142 8 C 0.224 3.776 9 N -0.689 5.689 10 C 0.649 3.351 11 O -0.601 6.601 12 N -0.459 5.459 13 C 0.116 3.884 14 C -0.295 4.295 15 H 0.099 0.901 16 C 0.029 3.971 17 N -0.891 5.891 18 Si 0.933 3.067 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.401 0.599 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.016 0.984 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 11.128 -1.270 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.181 4.181 3 C 0.094 3.906 4 F -0.123 7.123 5 C -0.211 4.211 6 C -0.095 4.095 7 C -0.163 4.163 8 C 0.124 3.876 9 N -0.336 5.336 10 C 0.352 3.648 11 O -0.483 6.483 12 N -0.181 5.181 13 C -0.028 4.028 14 C -0.423 4.423 15 H 0.116 0.884 16 C -0.173 4.173 17 N -0.531 5.531 18 Si 0.759 3.241 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.176 0.824 28 H 0.239 0.761 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.830 10.832 -1.007 10.910 hybrid contribution -0.428 -0.626 0.059 0.761 sum -1.258 10.206 -0.948 10.327 Atomic orbital electron populations 1.20579 0.90530 1.03106 1.02308 1.19415 0.96622 0.90921 1.11146 1.17102 0.89760 0.80094 1.03623 1.91433 1.80671 1.46056 1.94115 1.20910 0.91936 0.99525 1.08776 1.20854 0.99873 0.91058 0.97690 1.21692 0.92796 1.00236 1.01554 1.17196 0.91299 0.83989 0.95108 1.43091 1.18800 1.06714 1.64968 1.15990 0.84528 0.80558 0.83715 1.90703 1.21042 1.84723 1.51792 1.42808 1.16610 1.04461 1.54259 1.21528 0.84644 0.96980 0.99675 1.19496 1.23940 0.82203 1.16659 0.88355 1.25363 0.97044 0.99424 0.95495 1.69975 1.35542 1.25413 1.22172 0.85895 0.79384 0.79990 0.78788 1.19941 1.20958 1.19784 0.91241 0.91414 0.91209 0.85495 0.85255 0.82430 0.76103 0.91753 0.90883 0.96612 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.27 36.01 0.33 -1.06 16 2 C -0.18 -2.77 5.90 -104.36 -0.62 -3.39 16 3 C 0.11 1.72 7.24 -39.45 -0.29 1.43 16 4 F -0.14 -2.08 16.48 2.25 0.04 -2.05 16 5 C -0.19 -2.67 10.02 -39.48 -0.40 -3.07 16 6 C -0.08 -1.12 10.04 -39.62 -0.40 -1.52 16 7 C -0.14 -2.59 8.71 -39.38 -0.34 -2.93 16 8 C 0.22 4.07 6.41 -83.71 -0.54 3.53 16 9 N -0.69 -13.28 4.86 -14.23 -0.07 -13.35 16 10 C 0.65 15.56 8.04 -86.92 -0.70 14.86 16 11 O -0.60 -16.02 13.23 5.28 0.07 -15.95 16 12 N -0.46 -11.47 3.02 -127.61 -0.39 -11.85 16 13 C 0.12 2.48 8.59 59.85 0.51 2.99 16 14 C -0.29 -8.01 9.26 -14.93 -0.14 -8.15 16 15 H 0.10 2.78 7.43 -52.48 -0.39 2.39 16 16 C 0.03 0.75 5.24 -17.47 -0.09 0.66 16 17 N -0.89 -23.17 10.44 55.49 0.58 -22.59 16 18 Si 0.93 20.45 29.56 -169.99 -5.02 15.43 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.86 6.99 -51.93 -0.36 0.50 16 24 H 0.07 0.83 7.64 -51.93 -0.40 0.44 16 25 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.16 3.30 5.79 -52.49 -0.30 2.99 16 28 H 0.40 6.67 5.00 -40.82 -0.20 6.47 16 29 H 0.06 1.45 7.37 -51.93 -0.38 1.07 16 30 H 0.07 1.65 7.24 -51.93 -0.38 1.27 16 31 H 0.02 0.27 6.05 -51.93 -0.31 -0.05 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 273.69 15.07 4.12 4.12 Total: -1.00 -29.37 273.69 -6.46 -35.82 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.13 Total: 7.05 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.66 Total: 3.35 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.13 Total: -47.79 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.07 Total: -15.95 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.37 -6.46 -35.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189039113.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.442 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds