Wall clock time and date at job start Sun Mar 29 2020 23:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99975 * 2 1 4 4 C 1.53001 * 109.47051 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46792 * 179.97438 * 4 3 2 6 6 C 1.42902 * 113.99860 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47147 * 330.00618 * 6 5 4 8 8 C 1.50709 * 109.46951 * 90.00250 * 6 5 4 9 9 H 1.08003 * 119.99566 * 56.07860 * 8 6 5 10 10 C 1.37866 * 120.00188 * 236.08351 * 8 6 5 11 11 N 1.31517 * 120.00136 * 174.56078 * 10 8 6 12 12 Si 1.86806 * 119.99963 * 354.55266 * 10 8 6 13 13 H 1.48505 * 109.46842 * 85.22990 * 12 10 8 14 14 H 1.48506 * 109.47041 * 205.22408 * 12 10 8 15 15 H 1.48493 * 109.47165 * 325.22982 * 12 10 8 16 16 C 1.50700 * 109.47339 * 209.99958 * 6 5 4 17 17 C 1.38230 * 119.99868 * 322.41209 * 16 6 5 18 18 C 1.38244 * 119.99495 * 179.80644 * 17 16 6 19 19 C 1.38230 * 120.00318 * 0.40130 * 18 17 16 20 20 C 1.38241 * 119.99813 * 359.85244 * 19 18 17 21 21 C 1.38233 * 119.99723 * 142.68480 * 16 6 5 22 22 H 1.09006 * 109.47038 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46788 * 299.99453 * 1 2 3 24 24 H 1.08998 * 109.47415 * 59.99866 * 1 2 3 25 25 H 1.08998 * 109.46855 * 60.00299 * 3 2 1 26 26 H 1.08994 * 109.46877 * 300.00111 * 3 2 1 27 27 H 1.08998 * 109.47020 * 60.00434 * 4 3 2 28 28 H 1.08994 * 109.47399 * 299.99825 * 4 3 2 29 29 H 0.97006 * 120.00030 * 179.97438 * 11 10 8 30 30 H 1.08002 * 120.00696 * 359.97438 * 17 16 6 31 31 H 1.08007 * 119.99539 * 180.23162 * 18 17 16 32 32 H 1.07997 * 120.00300 * 179.83829 * 19 18 17 33 33 H 1.07997 * 119.99910 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.00286 * 359.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 8 4.0637 3.3323 0.0000 6 6 5.4664 3.6051 0.0012 7 1 5.9924 2.8011 0.5159 8 6 5.9608 3.7001 -1.4194 9 1 5.5069 4.4020 -2.1032 10 6 6.9924 2.8909 -1.8458 11 7 7.3527 2.8965 -3.1107 12 14 7.8786 1.7869 -0.6271 13 1 7.1332 0.5106 -0.4826 14 1 9.2506 1.5056 -1.1208 15 1 7.9563 2.4666 0.6909 16 6 5.7241 4.9092 0.7109 17 6 4.8429 5.9636 0.5610 18 6 5.0772 7.1586 1.2153 19 6 6.1971 7.3019 2.0129 20 6 7.0811 6.2491 2.1587 21 6 6.8447 5.0529 1.5075 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8031 2.2371 0.8900 26 1 1.8031 2.2371 -0.8899 27 1 4.1616 1.4703 -0.8891 28 1 4.1609 1.4705 0.8908 29 1 8.0788 2.3274 -3.4107 30 1 3.9699 5.8530 -0.0652 31 1 4.3867 7.9812 1.1011 32 1 6.3815 8.2363 2.5220 33 1 7.9563 6.3612 2.7815 34 1 7.5354 4.2304 1.6214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225035389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:17 Heat of formation + Delta-G solvation = -27.641647 kcal Electronic energy + Delta-G solvation = -16097.404298 eV Core-core repulsion = 13507.385293 eV Total energy + Delta-G solvation = -2590.019005 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.70604 -36.85169 -33.04641 -31.64302 -30.30752 -30.00568 -28.91690 -27.05438 -23.18896 -22.36858 -21.69244 -20.18100 -17.24380 -16.49986 -16.04534 -15.62741 -15.21196 -14.70983 -14.37764 -13.93376 -13.73127 -13.56917 -13.23519 -12.87240 -12.77734 -12.49920 -12.19274 -11.99161 -11.57566 -11.36930 -11.03078 -10.76072 -10.55112 -10.33267 -9.93206 -9.80936 -9.48542 -8.79363 -8.57205 -8.25969 -7.83209 -7.60965 -6.28702 -4.31139 1.67816 2.05631 2.09699 2.66714 3.14056 3.19564 3.23557 4.20797 4.42913 4.68300 5.08014 5.09217 5.10658 5.24574 5.44974 5.49537 5.56826 5.62191 5.69895 5.80027 5.98886 6.13574 6.22236 6.27995 6.38630 6.49432 6.68959 6.74946 7.10024 7.19125 7.35737 7.43439 7.69587 8.09813 8.39464 8.84044 9.32417 10.83442 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.007394 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.570509 B = 3786.178757 C = 4969.748722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.262 6.262 3 C -0.078 4.078 4 C 0.087 3.913 5 O -0.391 6.391 6 C 0.215 3.785 7 H 0.033 0.967 8 C -0.523 4.523 9 H 0.082 0.918 10 C 0.080 3.920 11 N -0.880 5.880 12 Si 0.863 3.137 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.261 1.261 16 C -0.033 4.033 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.269 0.731 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 -0.380 8.921 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.038 6.038 3 C -0.226 4.226 4 C 0.009 3.991 5 O -0.312 6.312 6 C 0.159 3.841 7 H 0.051 0.949 8 C -0.560 4.560 9 H 0.101 0.899 10 C -0.125 4.125 11 N -0.516 5.516 12 Si 0.690 3.310 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.186 1.186 16 C -0.034 4.034 17 C -0.119 4.119 18 C -0.145 4.145 19 C -0.164 4.164 20 C -0.142 4.142 21 C -0.146 4.146 22 H 0.118 0.882 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.348 -1.181 8.770 11.502 hybrid contribution 0.019 0.273 0.384 0.471 sum -7.329 -0.908 9.154 11.761 Atomic orbital electron populations 1.23343 0.94372 1.06193 1.04874 1.86838 1.06936 1.11887 1.98121 1.23293 1.00761 0.92958 1.05620 1.21743 0.91062 0.85539 1.00765 1.87777 1.27040 1.21036 1.95324 1.19064 0.79484 0.90091 0.95475 0.94922 1.21264 1.18084 1.22657 0.93986 0.89949 1.25091 0.96438 0.95929 0.94994 1.69887 1.28532 1.38794 1.14413 0.87096 0.80080 0.81640 0.82188 1.19486 1.20684 1.18562 1.20180 0.93638 0.97022 0.92530 1.20941 0.99608 0.92334 0.99027 1.21055 0.97686 0.97427 0.98327 1.20896 0.96001 0.98420 1.01126 1.20937 0.99169 0.93626 1.00439 1.21003 0.97884 0.97912 0.97833 0.88249 0.90640 0.90466 0.89802 0.89231 0.92082 0.94158 0.92129 0.86037 0.87036 0.87201 0.87006 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.76 101.05 1.09 -0.12 16 2 S -0.26 -3.86 22.38 -107.50 -2.41 -6.26 16 3 C -0.08 -1.25 6.31 37.16 0.23 -1.01 16 4 C 0.09 1.73 5.75 37.16 0.21 1.94 16 5 O -0.39 -8.77 9.21 -35.23 -0.32 -9.09 16 6 C 0.21 5.14 2.26 -29.03 -0.07 5.08 16 7 H 0.03 0.78 4.33 -51.93 -0.22 0.56 16 8 C -0.52 -14.49 9.17 -34.44 -0.32 -14.81 16 9 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 10 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 11 N -0.88 -26.07 13.96 55.43 0.77 -25.30 16 12 Si 0.86 20.57 26.95 -169.99 -4.58 15.99 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.26 -5.83 5.42 56.52 0.31 -5.52 16 16 C -0.03 -0.73 4.97 -104.63 -0.52 -1.25 16 17 C -0.10 -2.04 9.36 -39.58 -0.37 -2.41 16 18 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 19 C -0.15 -2.39 10.05 -39.58 -0.40 -2.78 16 20 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 21 C -0.13 -2.60 9.67 -39.58 -0.38 -2.99 16 22 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 23 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 26 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.12 2.45 7.71 -52.49 -0.40 2.05 16 31 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.31 6.69 -52.48 -0.35 1.96 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -29.67 302.18 -8.25 -37.92 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.86 Total: 3.53 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -1.41 Total: -21.34 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.32 Total: -9.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.58 Total: 15.99 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.41 Total: -6.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.67 -8.25 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225035389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.283 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds