Wall clock time and date at job start Sun Mar 29 2020 23:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99975 * 2 1 4 4 C 1.53001 * 109.47051 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46792 * 179.97438 * 4 3 2 6 6 C 1.42902 * 113.99860 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47147 * 330.00618 * 6 5 4 8 8 C 1.50709 * 109.46951 * 90.00250 * 6 5 4 9 9 H 1.08003 * 119.99566 * 56.07860 * 8 6 5 10 10 C 1.37866 * 120.00188 * 236.08351 * 8 6 5 11 11 N 1.31517 * 120.00136 * 174.56078 * 10 8 6 12 12 Si 1.86806 * 119.99963 * 354.55266 * 10 8 6 13 13 H 1.48505 * 109.46842 * 85.22990 * 12 10 8 14 14 H 1.48506 * 109.47041 * 205.22408 * 12 10 8 15 15 H 1.48493 * 109.47165 * 325.22982 * 12 10 8 16 16 C 1.50700 * 109.47339 * 209.99958 * 6 5 4 17 17 C 1.38230 * 119.99868 * 322.41209 * 16 6 5 18 18 C 1.38244 * 119.99495 * 179.80644 * 17 16 6 19 19 C 1.38230 * 120.00318 * 0.40130 * 18 17 16 20 20 C 1.38241 * 119.99813 * 359.85244 * 19 18 17 21 21 C 1.38233 * 119.99723 * 142.68480 * 16 6 5 22 22 H 1.09006 * 109.47038 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46788 * 299.99453 * 1 2 3 24 24 H 1.08998 * 109.47415 * 59.99866 * 1 2 3 25 25 H 1.08998 * 109.46855 * 60.00299 * 3 2 1 26 26 H 1.08994 * 109.46877 * 300.00111 * 3 2 1 27 27 H 1.08998 * 109.47020 * 60.00434 * 4 3 2 28 28 H 1.08994 * 109.47399 * 299.99825 * 4 3 2 29 29 H 0.97006 * 120.00030 * 179.97438 * 11 10 8 30 30 H 1.08002 * 120.00696 * 359.97438 * 17 16 6 31 31 H 1.08007 * 119.99539 * 180.23162 * 18 17 16 32 32 H 1.07997 * 120.00300 * 179.83829 * 19 18 17 33 33 H 1.07997 * 119.99910 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.00286 * 359.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 8 4.0637 3.3323 0.0000 6 6 5.4664 3.6051 0.0012 7 1 5.9924 2.8011 0.5159 8 6 5.9608 3.7001 -1.4194 9 1 5.5069 4.4020 -2.1032 10 6 6.9924 2.8909 -1.8458 11 7 7.3527 2.8965 -3.1107 12 14 7.8786 1.7869 -0.6271 13 1 7.1332 0.5106 -0.4826 14 1 9.2506 1.5056 -1.1208 15 1 7.9563 2.4666 0.6909 16 6 5.7241 4.9092 0.7109 17 6 4.8429 5.9636 0.5610 18 6 5.0772 7.1586 1.2153 19 6 6.1971 7.3019 2.0129 20 6 7.0811 6.2491 2.1587 21 6 6.8447 5.0529 1.5075 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8031 2.2371 0.8900 26 1 1.8031 2.2371 -0.8899 27 1 4.1616 1.4703 -0.8891 28 1 4.1609 1.4705 0.8908 29 1 8.0788 2.3274 -3.4107 30 1 3.9699 5.8530 -0.0652 31 1 4.3867 7.9812 1.1011 32 1 6.3815 8.2363 2.5220 33 1 7.9563 6.3612 2.7815 34 1 7.5354 4.2304 1.6214 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225035389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:17 Heat of formation + Delta-G solvation = -44.810188 kcal Electronic energy + Delta-G solvation = -16098.148782 eV Core-core repulsion = 13507.385293 eV Total energy + Delta-G solvation = -2590.763489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25015 -38.52186 -35.02652 -33.35336 -31.75896 -31.45366 -29.76927 -28.95441 -24.92203 -23.94229 -23.15260 -21.80906 -19.33423 -17.97380 -17.63426 -16.99017 -16.82276 -16.22534 -16.10159 -15.37887 -14.95373 -14.83325 -14.65858 -14.43899 -14.19947 -13.99404 -13.65332 -13.39709 -13.10961 -12.93634 -12.80828 -12.32600 -12.18244 -11.86540 -11.81433 -11.33345 -11.03283 -10.87210 -10.33585 -9.69508 -9.41959 -8.77329 -8.44473 -6.52641 0.51534 0.61946 0.65875 1.23756 1.24762 1.33986 1.60728 2.19281 2.76583 3.09150 3.16237 3.86233 3.94544 4.10885 4.25348 4.30228 4.33735 4.34399 4.37346 4.38971 4.57634 4.69895 4.79975 4.85440 4.87258 4.88724 5.21829 5.29421 5.34839 5.69164 5.72828 5.87983 6.03637 6.26066 6.45967 6.62350 7.16366 8.71973 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.007394 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.570509 B = 3786.178757 C = 4969.748722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 S -0.304 6.304 3 C -0.066 4.066 4 C 0.083 3.917 5 O -0.398 6.398 6 C 0.222 3.778 7 H 0.033 0.967 8 C -0.530 4.530 9 H 0.032 0.968 10 C 0.027 3.973 11 N -0.930 5.930 12 Si 0.922 3.078 13 H -0.262 1.262 14 H -0.274 1.274 15 H -0.236 1.236 16 C -0.070 4.070 17 C -0.122 4.122 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.147 4.147 22 H 0.120 0.880 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 0.332 11.830 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.080 6.080 3 C -0.214 4.214 4 C 0.005 3.995 5 O -0.318 6.318 6 C 0.165 3.835 7 H 0.051 0.949 8 C -0.567 4.567 9 H 0.051 0.949 10 C -0.173 4.173 11 N -0.569 5.569 12 Si 0.744 3.256 13 H -0.187 1.187 14 H -0.200 1.200 15 H -0.160 1.160 16 C -0.070 4.070 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.137 4.137 21 C -0.165 4.165 22 H 0.138 0.862 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.785 -0.458 11.693 14.055 hybrid contribution 0.007 0.139 -0.522 0.540 sum -7.778 -0.319 11.171 13.616 Atomic orbital electron populations 1.23458 0.89620 1.07925 1.06171 1.86965 1.12129 1.10671 1.98255 1.23095 0.97721 0.94266 1.06308 1.21878 0.93941 0.83980 0.99666 1.87744 1.26149 1.22713 1.95197 1.18884 0.79741 0.91610 0.93244 0.94902 1.21377 1.18127 1.21537 0.95676 0.94947 1.25916 0.97176 0.97470 0.96742 1.70029 1.29728 1.40550 1.16597 0.86152 0.78844 0.79817 0.80778 1.18729 1.19968 1.15987 1.20161 0.95580 0.96505 0.94759 1.20984 0.99374 0.93585 1.00042 1.21423 0.98653 0.96846 0.97156 1.21423 0.94488 0.99646 0.99629 1.21362 1.00333 0.92434 0.99589 1.21143 0.97286 0.99491 0.98574 0.86203 0.88960 0.89567 0.88081 0.89499 0.95048 0.93323 0.91931 0.87480 0.83811 0.82836 0.83440 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.76 113.37 1.22 -0.61 16 2 S -0.30 -8.71 22.38 -56.49 -1.26 -9.97 16 3 C -0.07 -2.10 6.31 71.98 0.45 -1.64 16 4 C 0.08 3.39 5.75 71.98 0.41 3.80 16 5 O -0.40 -18.49 9.21 -148.98 -1.37 -19.87 16 6 C 0.22 10.95 2.26 29.10 0.07 11.02 16 7 H 0.03 1.60 4.33 -2.39 -0.01 1.59 16 8 C -0.53 -31.07 9.17 25.60 0.23 -30.84 16 9 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 10 C 0.03 1.57 5.47 84.65 0.46 2.03 16 11 N -0.93 -57.86 13.96 21.44 0.30 -57.56 16 12 Si 0.92 43.12 26.95 68.60 1.85 44.97 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 15 H -0.24 -10.04 5.42 99.48 0.54 -9.50 16 16 C -0.07 -3.10 4.97 -19.87 -0.10 -3.20 16 17 C -0.12 -4.93 9.36 22.27 0.21 -4.72 16 18 C -0.12 -3.91 10.05 22.27 0.22 -3.69 16 19 C -0.13 -3.79 10.05 22.27 0.22 -3.56 16 20 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 21 C -0.15 -5.77 9.67 22.27 0.22 -5.55 16 22 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 29 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 30 H 0.11 4.50 7.71 -2.91 -0.02 4.48 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.11 4.35 6.69 -2.91 -0.02 4.33 16 Total: -1.00 -68.84 302.18 4.26 -64.58 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.90 Total: 18.30 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.85 Total: -40.45 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.30 Total: -57.56 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.37 Total: -19.87 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.85 Total: 44.97 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.26 Total: -9.97 kcal Total: -68.84 4.26 -64.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225035389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.772 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds