Wall clock time and date at job start Sun Mar 29 2020 23:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00517 * 2 1 4 4 H 1.48504 * 109.47053 * 240.00528 * 3 2 1 5 5 H 1.48498 * 109.46712 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47355 * 120.00416 * 3 2 1 7 7 C 1.38817 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64492 * 0.04322 * 9 7 2 11 11 C 1.54912 * 104.83258 * 204.09304 * 10 9 7 12 12 C 1.55166 * 101.57852 * 322.98979 * 11 10 9 13 13 H 1.09002 * 110.87165 * 277.06974 * 12 11 10 14 14 O 1.42901 * 110.71789 * 153.86526 * 12 11 10 15 15 C 1.35734 * 116.99817 * 155.02312 * 14 12 11 16 16 N 1.32224 * 119.69728 * 0.25471 * 15 14 12 17 17 C 1.31959 * 121.67430 * 180.27078 * 16 15 14 18 18 C 1.38061 * 120.87511 * 359.46578 * 17 16 15 19 19 C 1.38794 * 119.31017 * 0.26109 * 18 17 16 20 20 C 1.38580 * 118.46171 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.46313 * 180.02562 * 20 19 18 22 22 C 1.47016 * 125.65213 * 179.97438 * 9 7 2 23 23 H 0.97005 * 119.99428 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.36870 * 322.93013 * 10 9 7 25 25 H 1.09002 * 110.36760 * 85.14569 * 10 9 7 26 26 H 1.08999 * 111.00511 * 204.91805 * 11 10 9 27 27 H 1.09000 * 111.00431 * 81.05639 * 11 10 9 28 28 H 1.08002 * 119.56622 * 179.75379 * 17 16 15 29 29 H 1.08002 * 120.34931 * 180.23610 * 18 17 16 30 30 H 1.08002 * 120.76847 * 179.97438 * 19 18 17 31 31 H 1.08995 * 109.88008 * 59.55901 * 22 9 7 32 32 H 1.09000 * 110.01511 * 298.46740 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0009 11 6 -0.4020 -3.9324 0.6105 12 6 0.7781 -4.7524 0.0254 13 1 0.5479 -5.1000 -0.9817 14 8 1.0999 -5.8538 0.8772 15 6 1.7060 -6.9225 0.3003 16 7 1.9743 -6.9034 -0.9943 17 6 2.5575 -7.9226 -1.5962 18 6 2.9213 -9.0502 -0.8874 19 6 2.6627 -9.1093 0.4749 20 6 2.0437 -8.0255 1.0772 21 9 1.7735 -8.0397 2.4009 22 6 1.9315 -3.7275 -0.0016 23 1 -0.4849 0.8401 0.0004 24 1 -0.5996 -1.7589 0.6148 25 1 -0.5274 -2.4845 -1.0192 26 1 -1.3593 -4.3327 0.2767 27 1 -0.3525 -3.8986 1.6989 28 1 2.7572 -7.8723 -2.6564 29 1 3.4016 -9.8780 -1.3879 30 1 2.9369 -9.9800 1.0521 31 1 2.5582 -3.8515 0.8816 32 1 2.5294 -3.8657 -0.9025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226053925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:16 Heat of formation + Delta-G solvation = -10.912785 kcal Electronic energy + Delta-G solvation = -18195.654962 eV Core-core repulsion = 15072.440950 eV Total energy + Delta-G solvation = -3123.214012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.84876 -40.51298 -38.38755 -36.19597 -32.43595 -32.30455 -30.31106 -29.15188 -27.28837 -24.77017 -23.71803 -23.25438 -20.30701 -20.24935 -18.41188 -17.57386 -17.24954 -16.80964 -16.14827 -15.54534 -14.85959 -14.67613 -14.33295 -13.99389 -13.82253 -13.28127 -12.87316 -12.60720 -12.51014 -12.40934 -11.77592 -11.47602 -10.99872 -10.77369 -10.54541 -10.31110 -10.12013 -9.90487 -9.84600 -9.67978 -9.56140 -8.65502 -8.38465 -6.85274 -5.65794 -3.07671 0.84914 1.01803 3.03313 3.42165 3.45793 3.47528 3.53118 4.02613 4.27152 4.49697 4.54213 4.74652 5.01774 5.33810 5.40743 5.44224 5.51336 5.68156 5.73917 5.77915 5.84447 6.16038 6.34144 6.47273 6.52624 6.67731 6.72049 7.43610 7.47847 7.61374 7.70502 7.82488 8.33808 9.20949 9.81299 10.45269 11.38669 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039613 B = 0.004875 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.660791 B = 5742.264033 C = 5920.281517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.139 4.139 12 C 0.077 3.923 13 H 0.093 0.907 14 O -0.288 6.288 15 C 0.311 3.689 16 N -0.511 5.511 17 C 0.133 3.867 18 C -0.196 4.196 19 C -0.077 4.077 20 C 0.021 3.979 21 F -0.125 7.125 22 C 0.125 3.875 23 H 0.254 0.746 24 H 0.114 0.886 25 H 0.017 0.983 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.166 0.834 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.029 0.971 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 -18.187 -1.426 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.178 4.178 12 C 0.021 3.979 13 H 0.111 0.889 14 O -0.193 6.193 15 C 0.130 3.870 16 N -0.235 5.235 17 C -0.023 4.023 18 C -0.216 4.216 19 C -0.103 4.103 20 C -0.001 4.001 21 F -0.104 7.104 22 C -0.001 4.001 23 H 0.064 0.936 24 H 0.131 0.869 25 H 0.035 0.965 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.183 0.817 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.047 0.953 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.784 -17.131 -1.568 17.427 hybrid contribution 0.746 0.069 0.428 0.863 sum 3.530 -17.062 -1.140 17.460 Atomic orbital electron populations 1.69747 1.04919 1.25002 1.57584 1.24789 0.95752 0.97723 1.02296 0.86111 0.78386 0.82837 0.77919 1.21174 1.21496 1.21121 1.19044 0.90540 0.82255 1.43250 0.90458 1.44362 1.01890 0.99471 1.87101 1.21985 0.84869 0.91637 0.98563 1.23265 0.94979 0.97956 1.01553 1.23697 0.97191 0.83097 0.93937 0.88875 1.86406 1.71018 1.24186 1.37726 1.20058 0.91187 0.87563 0.88216 1.67530 1.17157 1.30258 1.08526 1.22570 0.91808 0.87515 1.00395 1.21859 1.05144 1.00851 0.93752 1.21470 0.96069 0.97034 0.95709 1.17686 1.07558 0.95731 0.79169 1.91523 1.92125 1.96634 1.30117 1.21568 0.93740 0.86125 0.98669 0.93577 0.86866 0.96464 0.91514 0.90884 0.81727 0.83798 0.83202 0.95323 0.95165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 10.09 55.49 0.56 -26.58 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.39 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -16.12 3.39 -170.07 -0.58 -16.69 16 10 C 0.15 3.85 5.89 -2.53 -0.01 3.84 16 11 C -0.14 -2.83 6.81 -24.58 -0.17 -3.00 16 12 C 0.08 1.53 3.14 -24.89 -0.08 1.46 16 13 H 0.09 1.80 7.13 -51.93 -0.37 1.43 16 14 O -0.29 -5.48 9.72 -18.91 -0.18 -5.67 16 15 C 0.31 5.11 7.49 -17.07 -0.13 4.98 16 16 N -0.51 -7.76 8.71 -13.28 -0.12 -7.88 16 17 C 0.13 1.44 11.17 -17.56 -0.20 1.24 16 18 C -0.20 -1.70 10.10 -39.44 -0.40 -2.10 16 19 C -0.08 -0.77 10.16 -39.25 -0.40 -1.17 16 20 C 0.02 0.30 7.35 -39.14 -0.29 0.01 16 21 F -0.13 -1.90 17.13 2.25 0.04 -1.86 16 22 C 0.13 2.89 7.02 -3.07 -0.02 2.86 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.11 3.13 5.87 -51.93 -0.31 2.82 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 30 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -31.85 278.75 -6.64 -38.49 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -3.60 Total: -2.50 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.94 Total: 1.18 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.13 Total: -51.15 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.18 Total: -5.67 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.85 -6.64 -38.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226053925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.580 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds