Wall clock time and date at job start Sun Mar 29 2020 23:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00517 * 2 1 4 4 H 1.48504 * 109.47053 * 240.00528 * 3 2 1 5 5 H 1.48498 * 109.46712 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47355 * 120.00416 * 3 2 1 7 7 C 1.38817 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99928 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64492 * 0.04322 * 9 7 2 11 11 C 1.54912 * 104.83258 * 204.09304 * 10 9 7 12 12 C 1.55166 * 101.57852 * 322.98979 * 11 10 9 13 13 H 1.09002 * 110.87165 * 277.06974 * 12 11 10 14 14 O 1.42901 * 110.71789 * 153.86526 * 12 11 10 15 15 C 1.35734 * 116.99817 * 155.02312 * 14 12 11 16 16 N 1.32224 * 119.69728 * 0.25471 * 15 14 12 17 17 C 1.31959 * 121.67430 * 180.27078 * 16 15 14 18 18 C 1.38061 * 120.87511 * 359.46578 * 17 16 15 19 19 C 1.38794 * 119.31017 * 0.26109 * 18 17 16 20 20 C 1.38580 * 118.46171 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.46313 * 180.02562 * 20 19 18 22 22 C 1.47016 * 125.65213 * 179.97438 * 9 7 2 23 23 H 0.97005 * 119.99428 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.36870 * 322.93013 * 10 9 7 25 25 H 1.09002 * 110.36760 * 85.14569 * 10 9 7 26 26 H 1.08999 * 111.00511 * 204.91805 * 11 10 9 27 27 H 1.09000 * 111.00431 * 81.05639 * 11 10 9 28 28 H 1.08002 * 119.56622 * 179.75379 * 17 16 15 29 29 H 1.08002 * 120.34931 * 180.23610 * 18 17 16 30 30 H 1.08002 * 120.76847 * 179.97438 * 19 18 17 31 31 H 1.08995 * 109.88008 * 59.55901 * 22 9 7 32 32 H 1.09000 * 110.01511 * 298.46740 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1417 -2.5331 -0.0009 11 6 -0.4020 -3.9324 0.6105 12 6 0.7781 -4.7524 0.0254 13 1 0.5479 -5.1000 -0.9817 14 8 1.0999 -5.8538 0.8772 15 6 1.7060 -6.9225 0.3003 16 7 1.9743 -6.9034 -0.9943 17 6 2.5575 -7.9226 -1.5962 18 6 2.9213 -9.0502 -0.8874 19 6 2.6627 -9.1093 0.4749 20 6 2.0437 -8.0255 1.0772 21 9 1.7735 -8.0397 2.4009 22 6 1.9315 -3.7275 -0.0016 23 1 -0.4849 0.8401 0.0004 24 1 -0.5996 -1.7589 0.6148 25 1 -0.5274 -2.4845 -1.0192 26 1 -1.3593 -4.3327 0.2767 27 1 -0.3525 -3.8986 1.6989 28 1 2.7572 -7.8723 -2.6564 29 1 3.4016 -9.8780 -1.3879 30 1 2.9369 -9.9800 1.0521 31 1 2.5582 -3.8515 0.8816 32 1 2.5294 -3.8657 -0.9025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226053925.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:16 Heat of formation + Delta-G solvation = -32.713826 kcal Electronic energy + Delta-G solvation = -18196.600326 eV Core-core repulsion = 15072.440950 eV Total energy + Delta-G solvation = -3124.159376 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.91982 -41.61102 -39.77448 -37.87959 -34.35693 -33.32120 -31.62045 -30.84317 -29.06743 -26.65459 -24.86537 -24.28473 -22.20104 -21.87005 -19.63369 -19.12320 -18.50901 -18.16209 -17.34047 -16.91156 -16.52160 -16.16315 -15.75831 -15.41744 -15.05763 -14.58947 -14.39164 -13.99839 -13.88700 -13.70191 -13.44528 -13.15100 -12.96947 -12.66646 -12.32862 -12.08162 -11.90555 -11.74500 -11.47314 -10.86840 -10.78947 -10.72054 -9.44971 -8.98146 -7.82190 -5.28402 -0.06764 0.12056 1.45950 1.49995 1.56476 1.81864 2.47466 2.60953 2.98315 3.28623 3.32842 3.62452 3.68673 3.72956 3.92681 3.99021 4.12482 4.21676 4.51816 4.62355 4.66403 4.83469 4.88708 4.90663 4.95144 5.01461 5.39146 5.48412 5.52651 5.70503 6.15916 6.24231 6.73636 7.04430 7.68936 8.32939 9.20230 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039613 B = 0.004875 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.660791 B = 5742.264033 C = 5920.281517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.987 3.013 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.158 3.842 11 C -0.126 4.126 12 C 0.098 3.902 13 H 0.099 0.901 14 O -0.308 6.308 15 C 0.269 3.731 16 N -0.541 5.541 17 C 0.123 3.877 18 C -0.165 4.165 19 C -0.064 4.064 20 C -0.001 4.001 21 F -0.139 7.139 22 C 0.128 3.872 23 H 0.251 0.749 24 H 0.085 0.915 25 H 0.002 0.998 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.197 0.803 29 H 0.194 0.806 30 H 0.187 0.813 31 H 0.016 0.984 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -20.478 -2.318 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.814 3.186 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.033 3.967 11 C -0.164 4.164 12 C 0.042 3.958 13 H 0.117 0.883 14 O -0.215 6.215 15 C 0.090 3.910 16 N -0.264 5.264 17 C -0.032 4.032 18 C -0.185 4.185 19 C -0.090 4.090 20 C -0.023 4.023 21 F -0.118 7.118 22 C 0.002 3.998 23 H 0.061 0.939 24 H 0.102 0.898 25 H 0.020 0.980 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.214 0.786 29 H 0.211 0.789 30 H 0.205 0.795 31 H 0.034 0.966 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.090 -19.464 -2.464 20.041 hybrid contribution 0.444 0.596 0.618 0.966 sum 4.534 -18.868 -1.846 19.493 Atomic orbital electron populations 1.69990 1.06221 1.25515 1.57903 1.25678 0.96742 1.01016 1.01945 0.85045 0.77145 0.78244 0.78207 1.20256 1.21384 1.20346 1.19408 0.91001 0.83555 1.43823 0.90394 1.44655 1.02820 1.00376 1.87123 1.21767 0.84013 0.93597 0.97338 1.23076 0.96874 0.95485 1.00986 1.23234 0.95143 0.83046 0.94398 0.88304 1.86334 1.72491 1.24715 1.37964 1.20287 0.93597 0.87678 0.89428 1.67459 1.18313 1.32488 1.08182 1.23294 0.90723 0.87211 1.01993 1.22417 1.02206 1.00917 0.92943 1.21984 0.93948 0.96517 0.96574 1.18078 1.08960 0.96524 0.78711 1.91481 1.92479 1.96757 1.31096 1.21600 0.94808 0.85640 0.97766 0.93920 0.89755 0.98036 0.88441 0.91308 0.78583 0.78861 0.79534 0.96557 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.12 10.09 21.65 0.22 -56.90 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 3 Si 0.99 46.39 29.55 68.60 2.03 48.42 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.25 -14.69 10.27 84.03 0.86 -13.83 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -34.51 3.39 -691.99 -2.35 -36.86 16 10 C 0.16 8.16 5.89 86.86 0.51 8.67 16 11 C -0.13 -5.22 6.81 31.99 0.22 -5.00 16 12 C 0.10 4.00 3.14 31.79 0.10 4.10 16 13 H 0.10 3.86 7.13 -2.39 -0.02 3.85 16 14 O -0.31 -11.98 9.72 -90.57 -0.88 -12.86 16 15 C 0.27 8.80 7.49 84.84 0.64 9.43 16 16 N -0.54 -15.84 8.71 -308.77 -2.69 -18.53 16 17 C 0.12 2.26 11.17 84.63 0.95 3.21 16 18 C -0.17 -2.05 10.10 22.36 0.23 -1.83 16 19 C -0.06 -1.05 10.16 22.48 0.23 -0.82 16 20 C 0.00 -0.02 7.35 22.55 0.17 0.15 16 21 F -0.14 -4.19 17.13 44.97 0.77 -3.42 16 22 C 0.13 6.07 7.02 86.73 0.61 6.68 16 23 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 24 H 0.08 4.87 5.87 -2.39 -0.01 4.85 16 25 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 30 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.02 0.81 8.06 -2.39 -0.02 0.79 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -72.46 278.75 3.19 -69.27 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.13 Total: 3.19 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.97 Total: 7.69 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.82 Total: -112.29 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.88 Total: -12.86 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.77 Total: -3.42 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -72.46 3.19 -69.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226053925.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.552 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds