Wall clock time and date at job start Sun Mar 29 2020 22:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48502 * 109.47213 * 240.00095 * 3 2 1 5 5 H 1.48493 * 109.47428 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46563 * 120.00593 * 3 2 1 7 7 C 1.38809 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99657 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64542 * 359.96960 * 9 7 2 11 11 C 1.54327 * 107.26790 * 178.99180 * 10 9 7 12 12 C 1.55154 * 102.94290 * 337.80696 * 11 10 9 13 13 H 1.09002 * 111.00378 * 277.42832 * 12 11 10 14 14 O 1.42903 * 111.00450 * 153.61675 * 12 11 10 15 15 C 1.35459 * 117.00134 * 153.17747 * 14 12 11 16 16 N 1.32523 * 119.59501 * 359.72781 * 15 14 12 17 17 N 1.28706 * 121.44746 * 179.74192 * 16 15 14 18 18 C 1.31961 * 120.53984 * 0.53489 * 17 16 15 19 19 C 1.39526 * 119.16904 * 359.72983 * 18 17 16 20 20 O 1.35513 * 120.67544 * 180.02562 * 19 18 17 21 21 N 1.32512 * 119.59415 * 179.97438 * 15 14 12 22 22 C 1.47418 * 125.64960 * 180.02562 * 9 7 2 23 23 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.88066 * 59.57163 * 10 9 7 25 25 H 1.08996 * 110.00664 * 298.48150 * 10 9 7 26 26 H 1.09004 * 110.71649 * 219.44279 * 11 10 9 27 27 H 1.09001 * 110.71543 * 96.16961 * 11 10 9 28 28 H 1.08005 * 120.41646 * 179.75643 * 18 17 16 29 29 H 0.96701 * 114.00670 * 269.97863 * 20 19 18 30 30 H 1.08995 * 110.37279 * 85.24162 * 22 9 7 31 31 H 1.08997 * 110.36990 * 322.91360 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0016 11 6 -0.4486 -4.0441 -0.0290 12 6 0.8518 -4.6559 -0.6139 13 1 0.8568 -4.5957 -1.7022 14 8 1.0242 -6.0057 -0.1775 15 6 1.7375 -6.8267 -0.9850 16 7 2.2307 -6.3591 -2.1227 17 7 2.9176 -7.1063 -2.9142 18 6 3.1417 -8.3719 -2.6154 19 6 2.6291 -8.8909 -1.4260 20 8 2.8412 -10.1861 -1.0887 21 7 1.9293 -8.0889 -0.6301 22 6 1.9334 -3.7311 -0.0017 23 1 -0.4850 0.8401 0.0004 24 1 -0.5576 -2.0518 -0.8849 25 1 -0.5567 -2.0843 0.8990 26 1 -1.2986 -4.2512 -0.6791 27 1 -0.6317 -4.4184 0.9783 28 1 3.7150 -8.9981 -3.2829 29 1 2.1609 -10.7931 -1.4109 30 1 2.1663 -4.0423 1.0166 31 1 2.8329 -3.7404 -0.6172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226167462.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:14 Heat of formation + Delta-G solvation = 44.205181 kcal Electronic energy + Delta-G solvation = -18123.395165 eV Core-core repulsion = 15022.491209 eV Total energy + Delta-G solvation = -3100.903956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.08659 -39.30473 -38.18601 -36.51875 -34.53210 -32.37796 -31.64890 -29.34213 -27.53658 -25.75795 -25.14784 -24.15512 -21.06332 -20.24888 -19.54558 -19.10307 -18.07397 -16.97219 -16.66220 -16.46420 -15.54841 -14.81003 -14.40815 -14.36071 -13.65636 -13.11355 -12.88325 -12.48843 -12.37449 -12.17218 -11.85502 -11.54732 -11.48432 -10.98702 -10.80324 -10.52782 -10.40895 -10.14289 -10.01036 -9.75994 -9.43139 -9.36224 -8.63738 -6.91021 -5.75109 -3.09730 0.17923 0.60035 2.09416 2.96204 3.23478 3.41353 3.45153 3.46527 3.78363 3.91566 4.44324 4.54036 4.75432 5.13735 5.32207 5.36594 5.51509 5.61167 5.67145 6.01676 6.24575 6.30436 6.37333 6.54119 6.62148 6.79435 7.27194 7.48822 7.50889 7.76320 8.18820 8.23715 9.16621 9.75930 10.39625 11.36850 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.004632 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.992884 B = 6043.526403 C = 6384.549199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.180 3.820 11 C -0.137 4.137 12 C 0.069 3.931 13 H 0.104 0.896 14 O -0.270 6.270 15 C 0.478 3.522 16 N -0.324 5.324 17 N -0.132 5.132 18 C -0.067 4.067 19 C 0.379 3.621 20 O -0.465 6.465 21 N -0.508 5.508 22 C 0.125 3.875 23 H 0.254 0.746 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.193 0.807 29 H 0.415 0.585 30 H 0.028 0.972 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -18.405 -4.765 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.055 3.945 11 C -0.175 4.175 12 C 0.012 3.988 13 H 0.122 0.878 14 O -0.167 6.167 15 C 0.175 3.825 16 N -0.190 5.190 17 N 0.016 4.984 18 C -0.239 4.239 19 C 0.180 3.820 20 O -0.272 6.272 21 N -0.251 5.251 22 C -0.002 4.002 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.210 0.790 29 H 0.277 0.723 30 H 0.046 0.954 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.002 -16.935 -4.357 17.601 hybrid contribution 0.268 -0.321 0.087 0.427 sum 2.271 -17.257 -4.270 17.921 Atomic orbital electron populations 1.69922 1.04921 1.25383 1.56801 1.24811 0.95768 0.97732 1.01883 0.86140 0.78440 0.82851 0.77983 1.21023 1.21514 1.21105 1.19023 0.90526 0.82015 1.44287 0.90267 1.44289 1.01604 0.99441 1.87391 1.21223 0.84514 0.86753 1.02009 1.23150 0.94324 0.99100 1.00967 1.24252 0.99249 0.74341 1.00974 0.87774 1.86179 1.63806 1.23563 1.43125 1.22102 0.87424 0.86015 0.86951 1.73833 1.12382 1.28785 1.04006 1.73513 1.02522 1.01781 1.20628 1.25114 1.04924 0.96433 0.97427 1.20021 0.88074 0.86906 0.86980 1.84746 1.50319 1.12153 1.79970 1.67543 1.18754 1.04182 1.34589 1.21820 0.94266 0.86381 0.97718 0.93539 0.92784 0.92953 0.91040 0.90903 0.79025 0.72337 0.95395 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.31 55.49 0.57 -26.33 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.61 3.39 -170.08 -0.58 -16.19 16 10 C 0.18 4.34 5.37 -3.06 -0.02 4.33 16 11 C -0.14 -2.61 6.69 -24.90 -0.17 -2.78 16 12 C 0.07 1.32 3.28 -24.58 -0.08 1.24 16 13 H 0.10 2.00 7.04 -51.93 -0.37 1.64 16 14 O -0.27 -4.90 10.01 -18.07 -0.18 -5.08 16 15 C 0.48 7.97 8.56 -90.91 -0.78 7.19 16 16 N -0.32 -5.38 9.86 29.17 0.29 -5.09 16 17 N -0.13 -1.85 11.61 30.74 0.36 -1.49 16 18 C -0.07 -0.67 11.32 -17.02 -0.19 -0.86 16 19 C 0.38 4.07 7.84 -16.61 -0.13 3.94 16 20 O -0.47 -3.37 13.58 -18.23 -0.25 -3.62 16 21 N -0.51 -7.50 10.59 -14.63 -0.15 -7.65 16 22 C 0.13 2.77 6.97 -2.53 -0.02 2.75 16 23 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.05 1.41 7.38 -51.93 -0.38 1.03 16 25 H 0.05 1.38 7.50 -51.93 -0.39 0.99 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.19 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.42 0.59 9.06 45.56 0.41 1.00 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -33.42 273.77 -4.86 -38.28 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -2.39 Total: -2.97 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -1.63 Total: 8.89 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.48 Total: -56.75 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.43 Total: -8.70 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.42 -4.86 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226167462.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.487 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds