Wall clock time and date at job start Sun Mar 29 2020 22:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48502 * 109.47213 * 240.00095 * 3 2 1 5 5 H 1.48493 * 109.47428 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46563 * 120.00593 * 3 2 1 7 7 C 1.38809 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99657 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64542 * 359.96960 * 9 7 2 11 11 C 1.54327 * 107.26790 * 178.99180 * 10 9 7 12 12 C 1.55154 * 102.94290 * 337.80696 * 11 10 9 13 13 H 1.09002 * 111.00378 * 277.42832 * 12 11 10 14 14 O 1.42903 * 111.00450 * 153.61675 * 12 11 10 15 15 C 1.35459 * 117.00134 * 153.17747 * 14 12 11 16 16 N 1.32523 * 119.59501 * 359.72781 * 15 14 12 17 17 N 1.28706 * 121.44746 * 179.74192 * 16 15 14 18 18 C 1.31961 * 120.53984 * 0.53489 * 17 16 15 19 19 C 1.39526 * 119.16904 * 359.72983 * 18 17 16 20 20 O 1.35513 * 120.67544 * 180.02562 * 19 18 17 21 21 N 1.32512 * 119.59415 * 179.97438 * 15 14 12 22 22 C 1.47418 * 125.64960 * 180.02562 * 9 7 2 23 23 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.88066 * 59.57163 * 10 9 7 25 25 H 1.08996 * 110.00664 * 298.48150 * 10 9 7 26 26 H 1.09004 * 110.71649 * 219.44279 * 11 10 9 27 27 H 1.09001 * 110.71543 * 96.16961 * 11 10 9 28 28 H 1.08005 * 120.41646 * 179.75643 * 18 17 16 29 29 H 0.96701 * 114.00670 * 269.97863 * 20 19 18 30 30 H 1.08995 * 110.37279 * 85.24162 * 22 9 7 31 31 H 1.08997 * 110.36990 * 322.91360 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0016 11 6 -0.4486 -4.0441 -0.0290 12 6 0.8518 -4.6559 -0.6139 13 1 0.8568 -4.5957 -1.7022 14 8 1.0242 -6.0057 -0.1775 15 6 1.7375 -6.8267 -0.9850 16 7 2.2307 -6.3591 -2.1227 17 7 2.9176 -7.1063 -2.9142 18 6 3.1417 -8.3719 -2.6154 19 6 2.6291 -8.8909 -1.4260 20 8 2.8412 -10.1861 -1.0887 21 7 1.9293 -8.0889 -0.6301 22 6 1.9334 -3.7311 -0.0017 23 1 -0.4850 0.8401 0.0004 24 1 -0.5576 -2.0518 -0.8849 25 1 -0.5567 -2.0843 0.8990 26 1 -1.2986 -4.2512 -0.6791 27 1 -0.6317 -4.4184 0.9783 28 1 3.7150 -8.9981 -3.2829 29 1 2.1609 -10.7931 -1.4109 30 1 2.1663 -4.0423 1.0166 31 1 2.8329 -3.7404 -0.6172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226167462.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:14 Heat of formation + Delta-G solvation = 13.386460 kcal Electronic energy + Delta-G solvation = -18124.731565 eV Core-core repulsion = 15022.491209 eV Total energy + Delta-G solvation = -3102.240356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.10951 -40.62443 -39.03923 -38.17332 -35.59612 -34.29568 -32.72405 -31.22446 -29.27215 -26.83081 -26.72411 -25.58268 -22.54092 -22.09897 -20.57594 -20.23942 -19.15386 -18.94588 -17.63453 -17.42358 -16.85421 -16.56612 -16.06553 -15.84802 -15.07650 -14.74611 -14.21467 -13.96726 -13.68975 -13.58332 -13.38913 -12.97518 -12.75832 -12.60120 -12.49247 -12.21180 -12.09325 -11.95328 -11.77066 -11.62127 -10.73901 -10.60989 -10.44704 -8.99499 -7.88824 -5.26662 -0.74803 -0.38272 0.95819 1.47067 1.50652 1.57022 2.03910 2.22388 2.47056 2.78896 2.92893 3.30336 3.51529 3.60263 3.75935 3.81575 3.95380 4.03937 4.46669 4.57442 4.68801 4.73915 4.83503 4.88164 5.29891 5.39115 5.55028 5.67698 6.00161 6.14083 6.36809 7.04508 7.21460 7.67975 8.31472 9.21519 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045518 B = 0.004632 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.992884 B = 6043.526403 C = 6384.549199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.058 4.058 3 Si 0.983 3.017 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.187 3.813 11 C -0.122 4.122 12 C 0.092 3.908 13 H 0.103 0.897 14 O -0.280 6.280 15 C 0.461 3.539 16 N -0.358 5.358 17 N -0.164 5.164 18 C -0.034 4.034 19 C 0.398 3.602 20 O -0.457 6.457 21 N -0.532 5.532 22 C 0.125 3.875 23 H 0.251 0.749 24 H 0.027 0.973 25 H 0.022 0.978 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.244 0.756 29 H 0.443 0.557 30 H 0.026 0.974 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -20.688 -5.516 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.810 3.190 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.062 3.938 11 C -0.160 4.160 12 C 0.034 3.966 13 H 0.121 0.879 14 O -0.178 6.178 15 C 0.157 3.843 16 N -0.221 5.221 17 N -0.013 5.013 18 C -0.208 4.208 19 C 0.198 3.802 20 O -0.269 6.269 21 N -0.276 5.276 22 C -0.002 4.002 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.260 0.740 29 H 0.310 0.690 30 H 0.043 0.957 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.035 -19.268 -5.143 20.172 hybrid contribution 0.073 0.076 0.289 0.308 sum 3.108 -19.191 -4.854 20.038 Atomic orbital electron populations 1.70132 1.06225 1.25766 1.57501 1.25666 0.96711 1.00976 1.01815 0.85095 0.77183 0.78430 0.78247 1.20196 1.21580 1.20344 1.19394 0.91024 0.83343 1.44290 0.90117 1.44557 1.02571 1.00367 1.87369 1.20978 0.83575 0.90047 0.99204 1.22966 0.95354 0.95215 1.02454 1.23732 0.97509 0.74938 1.00389 0.87930 1.86102 1.64972 1.22798 1.43879 1.22070 0.88385 0.86513 0.87312 1.73765 1.13751 1.30211 1.04393 1.73431 1.03414 1.03582 1.20850 1.25873 1.02552 0.95154 0.97199 1.20249 0.85949 0.87758 0.86222 1.84728 1.51382 1.10730 1.80011 1.67543 1.20152 1.03796 1.36090 1.21858 0.95106 0.85546 0.97647 0.94001 0.95505 0.95961 0.88187 0.89793 0.73992 0.68966 0.95662 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.86 10.31 21.65 0.22 -56.63 16 2 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 3 Si 0.98 46.09 29.55 68.60 2.03 48.11 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.55 10.28 84.03 0.86 -13.69 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.62 -33.28 3.39 -692.00 -2.35 -35.63 16 10 C 0.19 9.33 5.37 86.73 0.47 9.80 16 11 C -0.12 -4.63 6.69 31.78 0.21 -4.41 16 12 C 0.09 3.53 3.28 31.99 0.11 3.63 16 13 H 0.10 3.98 7.04 -2.39 -0.02 3.96 16 14 O -0.28 -10.07 10.01 -87.57 -0.88 -10.95 16 15 C 0.46 15.05 8.56 180.45 1.54 16.60 16 16 N -0.36 -11.66 9.86 -174.47 -1.72 -13.38 16 17 N -0.16 -4.28 11.61 -56.64 -0.66 -4.94 16 18 C -0.03 -0.55 11.32 84.98 0.96 0.42 16 19 C 0.40 7.19 7.84 84.84 0.67 7.85 16 20 O -0.46 -4.59 13.58 -88.16 -1.20 -5.79 16 21 N -0.53 -14.75 10.59 -425.68 -4.51 -19.25 16 22 C 0.12 5.63 6.97 86.86 0.61 6.23 16 23 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.03 1.46 7.38 -2.39 -0.02 1.44 16 25 H 0.02 1.22 7.50 -2.39 -0.02 1.21 16 26 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 28 H 0.24 1.22 8.06 -2.91 -0.02 1.19 16 29 H 0.44 -0.90 9.06 -74.06 -0.67 -1.58 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -74.94 273.77 -2.66 -77.61 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: 0.50 Total: -2.69 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 5.89 Total: 23.54 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -9.01 Total: -129.84 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -2.07 Total: -16.74 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.94 -2.66 -77.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226167462.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.992 kcal (2) G-P(sol) polarization free energy of solvation -74.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds