Wall clock time and date at job start Sun Mar 29 2020 22:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.17232 * 272.37577 * 12 11 10 14 14 C 1.35465 * 117.00156 * 243.84584 * 13 12 11 15 15 N 1.32521 * 119.59823 * 359.97438 * 14 13 12 16 16 N 1.28700 * 121.45217 * 179.97438 * 15 14 13 17 17 C 1.31962 * 120.54027 * 359.97438 * 16 15 14 18 18 C 1.39532 * 119.16400 * 0.02562 * 17 16 15 19 19 O 1.35517 * 120.66814 * 179.97438 * 18 17 16 20 20 N 1.32510 * 119.59426 * 179.73115 * 14 13 12 21 21 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 24 24 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 25 25 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 26 26 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 27 27 H 1.08999 * 114.34242 * 139.68978 * 12 11 10 28 28 H 1.08001 * 120.41563 * 180.02562 * 17 16 15 29 29 H 0.96699 * 113.99810 * 90.00411 * 19 18 17 30 30 H 1.08997 * 113.47356 * 253.46676 * 21 10 9 31 31 H 1.08997 * 113.47044 * 23.93734 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3426 -5.0420 0.3465 14 6 5.9792 -6.0428 1.0007 15 7 6.7435 -5.7596 2.0456 16 7 7.3642 -6.6823 2.6934 17 6 7.2541 -7.9463 2.3307 18 6 6.4556 -8.2718 1.2337 19 8 6.3213 -9.5599 0.8345 20 7 5.8264 -7.2937 0.5909 21 6 5.4559 -2.6254 -0.2387 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 -0.8895 24 1 3.8746 -0.6808 0.8905 25 1 4.4654 -2.2360 2.0761 26 1 3.5271 -3.7542 1.7430 27 1 6.4064 -3.6257 1.4964 28 1 7.7755 -8.7191 2.8760 29 1 5.5855 -10.0268 1.2535 30 1 5.7214 -2.9782 -1.2352 31 1 5.9701 -1.7038 0.0339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226169866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:10 Heat of formation + Delta-G solvation = 64.820507 kcal Electronic energy + Delta-G solvation = -17741.004066 eV Core-core repulsion = 14640.994058 eV Total energy + Delta-G solvation = -3100.010008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.23560 -40.18823 -38.51543 -37.49078 -34.65481 -32.81592 -31.85785 -29.89024 -26.19121 -25.76531 -25.64131 -24.68065 -21.60890 -20.66248 -19.53370 -18.97696 -17.89634 -16.91522 -16.80789 -16.70906 -15.55069 -15.44765 -15.00598 -14.39958 -13.82198 -13.59171 -13.15960 -12.98840 -12.52347 -12.47243 -12.28258 -11.82002 -11.70230 -11.41471 -11.16962 -10.67676 -10.47824 -10.12696 -9.84889 -9.59835 -9.52123 -9.38672 -8.60723 -8.07562 -6.07238 -4.05200 0.04500 0.46163 1.90251 2.82790 3.07546 3.24737 3.32975 3.33442 3.63383 3.73443 4.33430 4.38576 4.46138 4.54356 4.70949 5.08137 5.22604 5.27132 5.53796 5.64524 5.84993 5.92965 6.06677 6.23118 6.35621 6.61598 6.70458 7.06093 7.23757 7.61837 7.75406 8.06753 8.59588 9.03856 9.53205 11.06156 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051434 B = 0.004053 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.251174 B = 6906.891530 C = 7147.473082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.125 3.875 10 N -0.447 5.447 11 C 0.002 3.998 12 C 0.047 3.953 13 O -0.240 6.240 14 C 0.478 3.522 15 N -0.334 5.334 16 N -0.134 5.134 17 C -0.064 4.064 18 C 0.383 3.617 19 O -0.465 6.465 20 N -0.503 5.503 21 C -0.003 4.003 22 H 0.264 0.736 23 H 0.031 0.969 24 H -0.002 1.002 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.194 0.806 29 H 0.418 0.582 30 H 0.090 0.910 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.781 -15.298 5.734 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.099 0.901 9 C -0.002 4.002 10 N -0.169 5.169 11 C -0.127 4.127 12 C -0.010 4.010 13 O -0.136 6.136 14 C 0.175 3.825 15 N -0.200 5.200 16 N 0.014 4.986 17 C -0.237 4.237 18 C 0.185 3.815 19 O -0.272 6.272 20 N -0.246 5.246 21 C -0.133 4.133 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.016 0.984 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.131 0.869 28 H 0.211 0.789 29 H 0.280 0.720 30 H 0.108 0.892 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 15.400 -14.302 4.889 21.578 hybrid contribution 0.309 0.454 0.437 0.702 sum 15.709 -13.848 5.326 21.608 Atomic orbital electron populations 1.69897 1.06140 1.26860 1.50887 1.24933 0.94775 0.98849 0.94846 0.86857 0.80331 0.84040 0.78490 1.20237 1.19234 1.21022 1.20946 0.88433 0.94880 1.50357 0.90135 1.20781 0.98358 0.85268 0.95825 1.69103 1.09710 1.23605 1.14507 1.24235 0.95103 0.99225 0.94188 1.23946 1.00838 0.77385 0.98806 1.86274 1.62367 1.14644 1.50344 1.22096 0.86802 0.86713 0.86886 1.73682 1.10748 1.26974 1.08583 1.73454 1.08968 0.97839 1.18312 1.25114 1.03161 0.97877 0.97511 1.20035 0.88981 0.85930 0.86600 1.84733 1.55034 1.17136 1.70285 1.67563 1.25598 0.99195 1.32218 1.24151 0.93975 0.95497 0.99659 0.92605 0.95153 0.98386 0.89662 0.89456 0.86893 0.78889 0.72017 0.89208 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.75 9.94 -34.44 -0.34 -15.10 16 8 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.12 3.01 3.64 -4.98 -0.02 2.99 16 10 N -0.45 -9.54 6.32 -246.10 -1.55 -11.10 16 11 C 0.00 0.04 7.55 -7.54 -0.06 -0.02 16 12 C 0.05 0.74 4.53 -26.20 -0.12 0.62 16 13 O -0.24 -4.07 10.24 -18.09 -0.19 -4.26 16 14 C 0.48 7.22 8.56 -90.91 -0.78 6.44 16 15 N -0.33 -4.67 9.77 29.17 0.29 -4.39 16 16 N -0.13 -1.58 11.61 30.75 0.36 -1.22 16 17 C -0.06 -0.54 11.32 -17.01 -0.19 -0.73 16 18 C 0.38 3.74 7.84 -16.61 -0.13 3.61 16 19 O -0.46 -3.08 13.58 -18.24 -0.25 -3.33 16 20 N -0.50 -7.03 10.59 -14.63 -0.15 -7.18 16 21 C 0.00 -0.06 7.52 -7.54 -0.06 -0.11 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 24 H 0.00 -0.04 6.73 -51.93 -0.35 -0.38 16 25 H 0.09 1.43 7.42 -51.93 -0.39 1.05 16 26 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.11 1.53 6.85 -51.93 -0.36 1.18 16 28 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.42 0.46 9.06 45.56 0.41 0.88 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 276.49 15.07 4.17 4.17 Total: -1.00 -35.38 276.49 -5.34 -40.72 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -2.32 Total: -2.59 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.79 Total: -0.43 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.29 Total: -50.95 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.43 Total: -7.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.38 -5.34 -40.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226169866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.540 kcal (2) G-P(sol) polarization free energy of solvation -35.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds