Wall clock time and date at job start Sun Mar 29 2020 22:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46904 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.47481 * 110.99885 * 265.96478 * 10 9 7 12 12 C 1.53509 * 87.93073 * 221.29687 * 11 10 9 13 13 O 1.42901 * 114.17232 * 272.37577 * 12 11 10 14 14 C 1.35465 * 117.00156 * 243.84584 * 13 12 11 15 15 N 1.32521 * 119.59823 * 359.97438 * 14 13 12 16 16 N 1.28700 * 121.45217 * 179.97438 * 15 14 13 17 17 C 1.31962 * 120.54027 * 359.97438 * 16 15 14 18 18 C 1.39532 * 119.16400 * 0.02562 * 17 16 15 19 19 O 1.35517 * 120.66814 * 179.97438 * 18 17 16 20 20 N 1.32510 * 119.59426 * 179.73115 * 14 13 12 21 21 C 1.47489 * 110.99948 * 169.99650 * 10 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 24 24 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 25 25 H 1.08990 * 113.47671 * 336.06796 * 11 10 9 26 26 H 1.09001 * 113.47203 * 106.53351 * 11 10 9 27 27 H 1.08999 * 114.34242 * 139.68978 * 12 11 10 28 28 H 1.08001 * 120.41563 * 180.02562 * 17 16 15 29 29 H 0.96699 * 113.99810 * 90.00411 * 19 18 17 30 30 H 1.08997 * 113.47356 * 253.46676 * 21 10 9 31 31 H 1.08997 * 113.47044 * 23.93734 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2681 -3.0454 1.3734 12 6 5.5417 -3.7153 0.8389 13 8 5.3426 -5.0420 0.3465 14 6 5.9792 -6.0428 1.0007 15 7 6.7435 -5.7596 2.0456 16 7 7.3642 -6.6823 2.6934 17 6 7.2541 -7.9463 2.3307 18 6 6.4556 -8.2718 1.2337 19 8 6.3213 -9.5599 0.8345 20 7 5.8264 -7.2937 0.5909 21 6 5.4559 -2.6254 -0.2387 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 -0.8895 24 1 3.8746 -0.6808 0.8905 25 1 4.4654 -2.2360 2.0761 26 1 3.5271 -3.7542 1.7430 27 1 6.4064 -3.6257 1.4964 28 1 7.7755 -8.7191 2.8760 29 1 5.5855 -10.0268 1.2535 30 1 5.7214 -2.9782 -1.2352 31 1 5.9701 -1.7038 0.0339 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226169866.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:10 Heat of formation + Delta-G solvation = 28.253249 kcal Electronic energy + Delta-G solvation = -17742.589741 eV Core-core repulsion = 14640.994058 eV Total energy + Delta-G solvation = -3101.595684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.13095 -41.47627 -39.33161 -38.59849 -35.58500 -34.92914 -32.75717 -31.69057 -27.72711 -27.00815 -26.72997 -25.77523 -23.34100 -21.88894 -20.42730 -19.92738 -18.97927 -18.92135 -17.86282 -17.45933 -16.99662 -16.50251 -16.42880 -15.91752 -15.30344 -14.87669 -14.63473 -14.50933 -13.70725 -13.64865 -13.40961 -13.19960 -13.04645 -12.58687 -12.48521 -12.31616 -11.83013 -11.76333 -11.64847 -11.50816 -10.81096 -10.59299 -10.45985 -9.64919 -8.30620 -6.35968 -0.77037 -0.39365 0.94453 1.34382 1.37762 1.48384 2.02475 2.19549 2.33577 2.74027 2.90548 3.01620 3.20403 3.21347 3.65415 3.78346 3.92085 4.31621 4.33318 4.47788 4.51861 4.64663 4.71279 4.75756 4.82442 5.27023 5.44643 5.66261 5.90371 6.04835 6.34422 6.52346 6.70230 7.18223 7.27492 8.86974 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.051434 B = 0.004053 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.251174 B = 6906.891530 C = 7147.473082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.244 1.244 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.024 0.976 9 C 0.136 3.864 10 N -0.490 5.490 11 C -0.003 4.003 12 C 0.070 3.930 13 O -0.269 6.269 14 C 0.462 3.538 15 N -0.350 5.350 16 N -0.158 5.158 17 C -0.033 4.033 18 C 0.397 3.603 19 O -0.460 6.460 20 N -0.541 5.541 21 C 0.002 3.998 22 H 0.268 0.732 23 H 0.034 0.966 24 H 0.016 0.984 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.138 0.862 28 H 0.244 0.756 29 H 0.443 0.557 30 H 0.093 0.907 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.850 -15.637 6.591 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.167 1.167 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.043 0.957 9 C 0.008 3.992 10 N -0.212 5.212 11 C -0.132 4.132 12 C 0.013 3.987 13 O -0.167 6.167 14 C 0.158 3.842 15 N -0.214 5.214 16 N -0.007 5.007 17 C -0.206 4.206 18 C 0.197 3.803 19 O -0.272 6.272 20 N -0.284 5.284 21 C -0.127 4.127 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.119 0.881 26 H 0.084 0.916 27 H 0.155 0.845 28 H 0.260 0.740 29 H 0.310 0.690 30 H 0.111 0.889 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.489 -14.685 5.778 24.308 hybrid contribution -0.676 0.198 0.193 0.731 sum 17.813 -14.487 5.971 23.724 Atomic orbital electron populations 1.70078 1.08460 1.28311 1.52352 1.26006 0.95719 1.03620 0.94009 0.85582 0.79438 0.77644 0.79468 1.18612 1.16695 1.20815 1.21223 0.91448 0.92994 1.50521 0.95735 1.20557 0.94790 0.87444 0.96425 1.68986 1.13430 1.21918 1.16905 1.24296 0.96129 0.99627 0.93152 1.23718 0.99829 0.77053 0.98126 1.86197 1.63657 1.15410 1.51474 1.22085 0.87818 0.86638 0.87665 1.73625 1.11225 1.28135 1.08445 1.73391 1.09557 0.99038 1.18721 1.25825 1.01039 0.97542 0.96236 1.20302 0.87772 0.86234 0.85956 1.84709 1.56361 1.15469 1.70615 1.67515 1.27260 0.99657 1.33971 1.24244 0.90899 0.97107 1.00431 0.92334 0.94809 0.96661 0.88071 0.91556 0.84466 0.73961 0.69022 0.88894 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.96 43.67 27.47 68.60 1.88 45.56 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.52 -31.51 9.94 25.60 0.25 -31.26 16 8 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 9 C 0.14 6.48 3.64 85.55 0.31 6.79 16 10 N -0.49 -21.10 6.32 -932.93 -5.89 -26.99 16 11 C 0.00 -0.10 7.55 83.58 0.63 0.53 16 12 C 0.07 2.13 4.53 30.94 0.14 2.27 16 13 O -0.27 -9.27 10.24 -87.63 -0.90 -10.17 16 14 C 0.46 13.82 8.56 180.45 1.55 15.36 16 15 N -0.35 -9.42 9.77 -174.47 -1.70 -11.13 16 16 N -0.16 -3.38 11.61 -56.64 -0.66 -4.04 16 17 C -0.03 -0.44 11.32 84.99 0.96 0.52 16 18 C 0.40 6.75 7.84 84.85 0.67 7.42 16 19 O -0.46 -4.61 13.58 -88.20 -1.20 -5.81 16 20 N -0.54 -14.70 10.59 -425.68 -4.51 -19.21 16 21 C 0.00 0.06 7.52 83.57 0.63 0.69 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.03 1.58 7.14 -2.38 -0.02 1.56 16 24 H 0.02 0.69 6.73 -2.39 -0.02 0.67 16 25 H 0.10 3.30 7.42 -2.39 -0.02 3.28 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.14 3.50 6.85 -2.39 -0.02 3.49 16 28 H 0.24 0.62 8.06 -2.91 -0.02 0.60 16 29 H 0.44 -0.54 9.06 -74.06 -0.67 -1.21 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.11 2.94 7.91 -2.39 -0.02 2.92 16 Total: -1.00 -81.34 276.49 -6.62 -87.96 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 0.45 Total: 1.49 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.60 Total: 2.99 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -12.46 Total: -122.02 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -2.10 Total: -15.98 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.56 kcal Total: -81.34 -6.62 -87.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226169866.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.212 kcal (2) G-P(sol) polarization free energy of solvation -81.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds