Wall clock time and date at job start Sun Mar 29 2020 23:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00115 * 2 1 4 4 H 1.48508 * 109.47015 * 85.13173 * 3 2 1 5 5 H 1.48503 * 109.47265 * 205.13155 * 3 2 1 6 6 H 1.48506 * 109.47260 * 325.13498 * 3 2 1 7 7 C 1.38810 * 119.99802 * 180.28129 * 2 1 3 8 8 H 1.08000 * 120.00159 * 172.03214 * 7 2 1 9 9 N 1.36943 * 120.00169 * 352.03007 * 7 2 1 10 10 C 1.47425 * 125.64869 * 346.14380 * 9 7 2 11 11 C 1.54902 * 104.83154 * 204.09197 * 10 9 7 12 12 C 1.55152 * 101.58433 * 322.99000 * 11 10 9 13 13 H 1.09001 * 110.72262 * 276.96626 * 12 11 10 14 14 O 1.42905 * 110.72311 * 153.86464 * 12 11 10 15 15 C 1.35964 * 117.00107 * 155.93334 * 14 12 11 16 16 C 1.38970 * 120.47701 * 6.08904 * 15 14 12 17 17 C 1.38663 * 118.40073 * 179.97438 * 16 15 14 18 18 C 1.38136 * 119.27388 * 359.97438 * 17 16 15 19 19 N 1.31944 * 120.91337 * 0.02562 * 18 17 16 20 20 C 1.31980 * 121.73591 * 359.72346 * 19 18 17 21 21 F 1.35101 * 119.68223 * 180.28966 * 20 19 18 22 22 C 1.47016 * 125.64790 * 165.83805 * 9 7 2 23 23 H 0.96993 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.36457 * 322.93321 * 10 9 7 25 25 H 1.08996 * 110.36544 * 85.13836 * 10 9 7 26 26 H 1.08999 * 111.00426 * 81.06586 * 11 10 9 27 27 H 1.09001 * 111.00429 * 204.91825 * 11 10 9 28 28 H 1.07993 * 120.80227 * 359.97438 * 16 15 14 29 29 H 1.07995 * 120.36232 * 180.02562 * 17 16 15 30 30 H 1.08001 * 119.54903 * 179.97438 * 18 17 16 31 31 H 1.09006 * 109.88298 * 298.39580 * 22 9 7 32 32 H 1.08999 * 109.88829 * 59.55617 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3948 2.1057 1.3951 5 1 3.5954 1.4126 -0.5946 6 1 1.5029 2.6208 -0.8004 7 6 2.0102 -1.2021 -0.0059 8 1 3.0824 -1.2061 -0.1356 9 7 1.3354 -2.3832 0.1527 10 6 -0.0560 -2.5217 0.6200 11 6 -0.1364 -3.9528 1.2072 12 6 0.7723 -4.7427 0.2286 13 1 0.2182 -5.0308 -0.6648 14 8 1.3270 -5.8928 0.8702 15 6 1.7079 -6.9231 0.0689 16 6 1.6727 -6.7907 -1.3141 17 6 2.0711 -7.8685 -2.0901 18 6 2.4877 -9.0303 -1.4697 19 7 2.5101 -9.1255 -0.1539 20 6 2.1438 -8.1220 0.6211 21 9 2.1886 -8.2629 1.9640 22 6 1.8764 -3.7225 -0.1207 23 1 -0.4850 0.8400 0.0004 24 1 -0.2725 -1.7824 1.3912 25 1 -0.7489 -2.4126 -0.2142 26 1 0.2629 -3.9822 2.2210 27 1 -1.1590 -4.3291 1.1807 28 1 1.3429 -5.8706 -1.7733 29 1 2.0568 -7.8001 -3.1678 30 1 2.7987 -9.8726 -2.0699 31 1 2.1420 -3.8070 -1.1746 32 1 2.7541 -3.9018 0.5003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226185853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:05 Heat of formation + Delta-G solvation = -11.386846 kcal Electronic energy + Delta-G solvation = -18200.332973 eV Core-core repulsion = 15077.098405 eV Total energy + Delta-G solvation = -3123.234569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.84053 -40.58343 -38.69636 -36.39822 -32.49645 -32.27019 -30.33269 -29.23550 -27.64398 -24.83829 -23.70329 -23.33605 -20.45134 -20.39708 -18.52373 -17.68157 -17.45929 -16.82696 -16.23935 -15.28230 -15.03830 -14.83781 -14.55929 -13.95209 -13.68700 -13.51504 -12.95842 -12.79515 -12.57242 -12.42472 -11.92567 -11.64822 -10.99187 -10.86564 -10.72897 -10.53094 -10.13664 -10.01645 -9.93118 -9.83120 -9.79310 -8.70167 -8.37031 -6.91915 -5.86181 -3.21810 0.82947 1.00149 2.97891 3.34695 3.40446 3.42095 3.46889 3.64025 4.34891 4.41079 4.56881 4.74456 5.03057 5.07214 5.12736 5.36842 5.43221 5.54478 5.63331 5.75357 5.85711 6.04414 6.21776 6.27600 6.35934 6.44631 6.55918 7.28388 7.32899 7.43942 7.52744 7.66770 8.13184 9.06995 9.67928 10.34142 11.27356 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039956 B = 0.004850 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.610540 B = 5771.988772 C = 5975.258520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.175 3.825 11 C -0.137 4.137 12 C 0.066 3.934 13 H 0.081 0.919 14 O -0.289 6.289 15 C 0.076 3.924 16 C -0.142 4.142 17 C -0.139 4.139 18 C 0.083 3.917 19 N -0.480 5.480 20 C 0.273 3.727 21 F -0.107 7.107 22 C 0.118 3.882 23 H 0.255 0.745 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.028 0.972 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -14.313 -3.568 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.050 3.950 11 C -0.176 4.176 12 C 0.010 3.990 13 H 0.099 0.901 14 O -0.201 6.201 15 C 0.025 3.975 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.073 4.073 19 N -0.195 5.195 20 C 0.118 3.882 21 F -0.086 7.086 22 C -0.008 4.008 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.184 0.816 31 H 0.045 0.955 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.258 -14.811 -2.916 15.148 hybrid contribution 0.152 1.655 -0.423 1.715 sum 1.410 -13.156 -3.339 13.646 Atomic orbital electron populations 1.69921 1.05056 1.25526 1.55874 1.24888 0.95670 0.97973 1.01436 0.86077 0.78727 0.83158 0.77644 1.21420 1.20462 1.21601 1.19024 0.90847 0.82285 1.44105 0.90557 1.44326 1.11345 0.99805 1.77057 1.21425 0.86370 0.89703 0.97541 1.23209 0.97365 0.97851 0.99132 1.23812 0.95498 0.82791 0.96900 0.90149 1.86279 1.75332 1.24089 1.34380 1.19873 0.97668 0.88904 0.91029 1.21856 1.01897 1.01466 0.91599 1.22050 0.98835 0.93172 1.01806 1.22354 0.98730 0.98064 0.88162 1.67046 1.15775 1.29140 1.07527 1.17440 1.02556 0.88895 0.79352 1.91628 1.93934 1.95914 1.27104 1.21718 0.94699 0.86596 0.97783 0.93486 0.90907 0.94684 0.90552 0.91127 0.82783 0.83666 0.81571 0.95453 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.16 10.78 55.49 0.60 -25.56 16 2 C 0.00 -0.07 5.40 -17.43 -0.09 -0.16 16 3 Si 0.91 21.60 29.56 -169.99 -5.02 16.58 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.43 10.22 -15.06 -0.15 -6.58 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 9 N -0.60 -14.96 3.39 -170.07 -0.58 -15.54 16 10 C 0.17 4.04 5.38 -2.53 -0.01 4.03 16 11 C -0.14 -2.51 6.81 -24.59 -0.17 -2.68 16 12 C 0.07 1.15 2.74 -24.89 -0.07 1.08 16 13 H 0.08 1.24 6.31 -51.93 -0.33 0.91 16 14 O -0.29 -4.97 9.75 -19.63 -0.19 -5.16 16 15 C 0.08 1.15 6.70 -39.02 -0.26 0.88 16 16 C -0.14 -1.76 9.00 -39.15 -0.35 -2.12 16 17 C -0.14 -1.35 10.10 -39.46 -0.40 -1.75 16 18 C 0.08 0.86 11.17 -17.54 -0.20 0.67 16 19 N -0.48 -6.70 10.37 -13.48 -0.14 -6.84 16 20 C 0.27 4.21 8.43 -17.20 -0.14 4.07 16 21 F -0.11 -1.76 17.14 2.25 0.04 -1.72 16 22 C 0.12 2.43 6.82 -3.06 -0.02 2.41 16 23 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 25 H 0.04 0.86 7.99 -51.93 -0.42 0.44 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.15 1.83 5.79 -52.49 -0.30 1.52 16 29 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.03 0.54 7.83 -51.93 -0.41 0.14 16 32 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -30.58 276.78 -6.48 -37.06 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -3.48 Total: -2.83 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.87 Total: -0.16 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.12 Total: -47.94 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.19 Total: -5.16 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.58 -6.48 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226185853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.671 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds