Wall clock time and date at job start Sun Mar 29 2020 23:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00115 * 2 1 4 4 H 1.48508 * 109.47015 * 85.13173 * 3 2 1 5 5 H 1.48503 * 109.47265 * 205.13155 * 3 2 1 6 6 H 1.48506 * 109.47260 * 325.13498 * 3 2 1 7 7 C 1.38810 * 119.99802 * 180.28129 * 2 1 3 8 8 H 1.08000 * 120.00159 * 172.03214 * 7 2 1 9 9 N 1.36943 * 120.00169 * 352.03007 * 7 2 1 10 10 C 1.47425 * 125.64869 * 346.14380 * 9 7 2 11 11 C 1.54902 * 104.83154 * 204.09197 * 10 9 7 12 12 C 1.55152 * 101.58433 * 322.99000 * 11 10 9 13 13 H 1.09001 * 110.72262 * 276.96626 * 12 11 10 14 14 O 1.42905 * 110.72311 * 153.86464 * 12 11 10 15 15 C 1.35964 * 117.00107 * 155.93334 * 14 12 11 16 16 C 1.38970 * 120.47701 * 6.08904 * 15 14 12 17 17 C 1.38663 * 118.40073 * 179.97438 * 16 15 14 18 18 C 1.38136 * 119.27388 * 359.97438 * 17 16 15 19 19 N 1.31944 * 120.91337 * 0.02562 * 18 17 16 20 20 C 1.31980 * 121.73591 * 359.72346 * 19 18 17 21 21 F 1.35101 * 119.68223 * 180.28966 * 20 19 18 22 22 C 1.47016 * 125.64790 * 165.83805 * 9 7 2 23 23 H 0.96993 * 120.00008 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.36457 * 322.93321 * 10 9 7 25 25 H 1.08996 * 110.36544 * 85.13836 * 10 9 7 26 26 H 1.08999 * 111.00426 * 81.06586 * 11 10 9 27 27 H 1.09001 * 111.00429 * 204.91825 * 11 10 9 28 28 H 1.07993 * 120.80227 * 359.97438 * 16 15 14 29 29 H 1.07995 * 120.36232 * 180.02562 * 17 16 15 30 30 H 1.08001 * 119.54903 * 179.97438 * 18 17 16 31 31 H 1.09006 * 109.88298 * 298.39580 * 22 9 7 32 32 H 1.08999 * 109.88829 * 59.55617 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3948 2.1057 1.3951 5 1 3.5954 1.4126 -0.5946 6 1 1.5029 2.6208 -0.8004 7 6 2.0102 -1.2021 -0.0059 8 1 3.0824 -1.2061 -0.1356 9 7 1.3354 -2.3832 0.1527 10 6 -0.0560 -2.5217 0.6200 11 6 -0.1364 -3.9528 1.2072 12 6 0.7723 -4.7427 0.2286 13 1 0.2182 -5.0308 -0.6648 14 8 1.3270 -5.8928 0.8702 15 6 1.7079 -6.9231 0.0689 16 6 1.6727 -6.7907 -1.3141 17 6 2.0711 -7.8685 -2.0901 18 6 2.4877 -9.0303 -1.4697 19 7 2.5101 -9.1255 -0.1539 20 6 2.1438 -8.1220 0.6211 21 9 2.1886 -8.2629 1.9640 22 6 1.8764 -3.7225 -0.1207 23 1 -0.4850 0.8400 0.0004 24 1 -0.2725 -1.7824 1.3912 25 1 -0.7489 -2.4126 -0.2142 26 1 0.2629 -3.9822 2.2210 27 1 -1.1590 -4.3291 1.1807 28 1 1.3429 -5.8706 -1.7733 29 1 2.0568 -7.8001 -3.1678 30 1 2.7987 -9.8726 -2.0699 31 1 2.1420 -3.8070 -1.1746 32 1 2.7541 -3.9018 0.5003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226185853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:05 Heat of formation + Delta-G solvation = -31.280080 kcal Electronic energy + Delta-G solvation = -18201.195609 eV Core-core repulsion = 15077.098405 eV Total energy + Delta-G solvation = -3124.097204 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98846 -41.67201 -39.94860 -37.99417 -34.37882 -33.25986 -31.63173 -30.81491 -29.24722 -26.63437 -24.87353 -24.38102 -22.25995 -21.82262 -19.67486 -19.05839 -18.75582 -18.27547 -17.39519 -16.84432 -16.53044 -16.07965 -15.93790 -15.36847 -15.03061 -14.82582 -14.33151 -14.19547 -13.91585 -13.66691 -13.49381 -13.17461 -12.87092 -12.66607 -12.37719 -12.04132 -11.96598 -11.81893 -11.58944 -10.89005 -10.79098 -10.73988 -9.45451 -8.91740 -7.94027 -5.31637 -0.12907 0.04455 1.46260 1.47598 1.56717 1.79655 2.46335 2.53213 2.61684 3.27260 3.39945 3.47522 3.59746 3.76683 3.83125 3.90243 4.05129 4.21696 4.51505 4.60025 4.66968 4.81419 4.84498 4.87723 4.91736 5.02070 5.37035 5.41630 5.51274 5.63460 6.11679 6.16221 6.58357 7.02057 7.67208 8.33216 9.18280 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.039956 B = 0.004850 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.610540 B = 5771.988772 C = 5975.258520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.054 4.054 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.268 1.268 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.180 3.820 11 C -0.125 4.125 12 C 0.084 3.916 13 H 0.107 0.893 14 O -0.307 6.307 15 C 0.050 3.950 16 C -0.142 4.142 17 C -0.119 4.119 18 C 0.093 3.907 19 N -0.500 5.500 20 C 0.244 3.756 21 F -0.125 7.125 22 C 0.117 3.883 23 H 0.252 0.748 24 H 0.038 0.962 25 H 0.018 0.982 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.162 0.838 29 H 0.190 0.810 30 H 0.210 0.790 31 H 0.040 0.960 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 -15.754 -5.547 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.248 4.248 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.193 1.193 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.348 5.348 10 C 0.055 3.945 11 C -0.164 4.164 12 C 0.028 3.972 13 H 0.125 0.875 14 O -0.219 6.219 15 C 0.001 3.999 16 C -0.169 4.169 17 C -0.138 4.138 18 C -0.064 4.064 19 N -0.215 5.215 20 C 0.091 3.909 21 F -0.104 7.104 22 C -0.009 4.009 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.179 0.821 29 H 0.207 0.793 30 H 0.226 0.774 31 H 0.058 0.942 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.797 -16.286 -4.883 17.097 hybrid contribution 0.055 1.965 0.077 1.968 sum 1.852 -14.321 -4.806 15.219 Atomic orbital electron populations 1.70092 1.06319 1.25898 1.56839 1.25675 0.96530 1.01038 1.01583 0.85079 0.77922 0.79044 0.77362 1.21442 1.19278 1.21639 1.19350 0.91230 0.83720 1.43757 0.90614 1.44596 1.11998 1.00843 1.77401 1.21206 0.85439 0.91810 0.95997 1.23031 0.99592 0.95060 0.98680 1.23524 0.93996 0.82419 0.97286 0.87536 1.86228 1.76152 1.24359 1.35155 1.20041 0.99472 0.88312 0.92105 1.22090 1.01560 1.02679 0.90531 1.22543 0.95968 0.91540 1.03746 1.23211 0.96456 0.99552 0.87147 1.67119 1.16378 1.28863 1.09153 1.17636 1.04447 0.89765 0.79070 1.91568 1.94290 1.96074 1.28459 1.21818 0.95372 0.85573 0.98121 0.93915 0.94399 0.96368 0.91179 0.87995 0.82093 0.79275 0.77359 0.94227 0.95811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.03 10.78 21.65 0.23 -54.79 16 2 C -0.05 -3.00 5.40 84.86 0.46 -2.54 16 3 Si 0.98 44.78 29.56 68.60 2.03 46.80 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.25 -14.00 10.22 84.03 0.86 -13.14 16 8 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 9 N -0.62 -31.49 3.39 -691.99 -2.35 -33.84 16 10 C 0.18 8.53 5.38 86.85 0.47 9.00 16 11 C -0.13 -4.54 6.81 31.98 0.22 -4.32 16 12 C 0.08 2.82 2.74 31.79 0.09 2.91 16 13 H 0.11 3.02 6.31 -2.39 -0.02 3.00 16 14 O -0.31 -10.37 9.75 -93.15 -0.91 -11.27 16 15 C 0.05 1.46 6.70 22.63 0.15 1.61 16 16 C -0.14 -3.11 9.00 22.55 0.20 -2.91 16 17 C -0.12 -1.76 10.10 22.35 0.23 -1.53 16 18 C 0.09 1.55 11.17 84.65 0.95 2.50 16 19 N -0.50 -12.98 10.37 -196.56 -2.04 -15.02 16 20 C 0.24 7.40 8.43 84.86 0.72 8.12 16 21 F -0.12 -4.21 17.14 44.97 0.77 -3.43 16 22 C 0.12 4.76 6.82 86.73 0.59 5.35 16 23 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 24 H 0.04 2.02 7.15 -2.39 -0.02 2.00 16 25 H 0.02 0.91 7.99 -2.39 -0.02 0.90 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.16 3.28 5.79 -2.91 -0.02 3.26 16 29 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 30 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.04 1.52 7.83 -2.38 -0.02 1.50 16 32 H 0.02 1.03 8.05 -2.39 -0.02 1.01 16 Total: -1.00 -68.60 276.78 3.80 -64.80 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.14 Total: 1.72 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.92 Total: 5.04 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.15 Total: -103.65 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -0.91 Total: -11.27 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.77 Total: -3.43 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.60 3.80 -64.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226185853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.522 kcal (2) G-P(sol) polarization free energy of solvation -68.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds