Wall clock time and date at job start Sun Mar 29 2020 23:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48497 * 109.46855 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47376 * 300.00336 * 3 2 1 6 6 H 1.48503 * 109.47057 * 60.00420 * 3 2 1 7 7 C 1.37878 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99215 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00479 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.47959 * 111.00240 * 170.00071 * 10 9 7 12 12 C 1.53934 * 86.18014 * 222.41380 * 11 10 9 13 13 O 1.42901 * 113.73267 * 138.07472 * 12 11 10 14 14 C 1.35969 * 116.99856 * 157.64955 * 13 12 11 15 15 C 1.38959 * 120.47861 * 5.93391 * 14 13 12 16 16 C 1.38666 * 118.40389 * 180.25732 * 15 14 13 17 17 C 1.38135 * 119.26983 * 359.44298 * 16 15 14 18 18 N 1.31942 * 120.91387 * 0.26934 * 17 16 15 19 19 C 1.31977 * 121.73795 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.68155 * 179.97438 * 19 18 17 21 21 C 1.47957 * 111.00514 * 70.63896 * 10 9 7 22 22 H 0.96997 * 120.00151 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47146 * 59.99529 * 9 7 2 24 24 H 1.09002 * 109.46764 * 300.00266 * 9 7 2 25 25 H 1.08997 * 113.75931 * 108.09381 * 11 10 9 26 26 H 1.09008 * 113.75599 * 336.73381 * 11 10 9 27 27 H 1.09002 * 113.73238 * 269.25210 * 12 11 10 28 28 H 1.08004 * 120.80249 * 359.97438 * 15 14 13 29 29 H 1.07993 * 120.36672 * 179.70941 * 16 15 14 30 30 H 1.08002 * 119.54632 * 180.25504 * 17 16 15 31 31 H 1.09003 * 113.75494 * 23.25774 * 21 10 9 32 32 H 1.09007 * 113.75765 * 251.90157 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 1.5161 -4.9028 0.2373 12 6 2.6920 -5.2417 1.1710 13 8 2.2953 -5.8756 2.3888 14 6 3.2368 -6.6126 3.0362 15 6 4.5510 -6.6303 2.5851 16 6 5.4747 -7.4011 3.2747 17 6 5.0656 -8.1121 4.3861 18 7 3.8114 -8.0704 4.7936 19 6 2.8998 -7.3543 4.1626 20 9 1.6272 -7.3421 4.6158 21 6 2.8973 -3.7218 1.3022 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8880 25 1 1.4581 -5.5402 -0.6450 26 1 0.5612 -4.8004 0.7529 27 1 3.5139 -5.7557 0.6727 28 1 4.8450 -6.0612 1.7156 29 1 6.5036 -7.4417 2.9490 30 1 5.7822 -8.7106 4.9290 31 1 2.3465 -3.2738 2.1292 32 1 3.9430 -3.4155 1.2707 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226187760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:00 Heat of formation + Delta-G solvation = -23.315790 kcal Electronic energy + Delta-G solvation = -17833.394475 eV Core-core repulsion = 14709.642628 eV Total energy + Delta-G solvation = -3123.751847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.00054 -41.84655 -40.62374 -38.51057 -35.03993 -33.25276 -31.69891 -30.71165 -27.58303 -26.95892 -25.19451 -24.40597 -23.17991 -20.97743 -19.77738 -18.83114 -18.66371 -18.34478 -17.44217 -16.94159 -16.45362 -16.13436 -16.03342 -15.90821 -14.90935 -14.84043 -14.67424 -14.10527 -13.92089 -13.80192 -13.70831 -13.40029 -13.01546 -12.79624 -12.60689 -12.21781 -11.76277 -11.60428 -11.22340 -10.88749 -10.77337 -10.69314 -9.76752 -9.44997 -8.26950 -6.38324 -0.12467 0.05229 1.39437 1.39850 1.53450 1.79027 2.36986 2.53066 2.61585 3.06021 3.11290 3.27852 3.40934 3.70092 3.74565 3.98654 4.06117 4.34453 4.46124 4.58008 4.65394 4.70864 4.78900 4.84820 4.86751 5.00890 5.04172 5.40561 5.45478 5.70146 6.01046 6.12814 6.26804 6.59553 6.76544 7.32102 8.85314 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.004398 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.883108 B = 6364.611220 C = 6554.373189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.066 0.934 9 C 0.176 3.824 10 N -0.480 5.480 11 C 0.002 3.998 12 C 0.067 3.933 13 O -0.314 6.314 14 C 0.049 3.951 15 C -0.138 4.138 16 C -0.117 4.117 17 C 0.091 3.909 18 N -0.504 5.504 19 C 0.238 3.762 20 F -0.128 7.128 21 C 0.002 3.998 22 H 0.266 0.734 23 H 0.008 0.992 24 H -0.028 1.028 25 H 0.118 0.882 26 H 0.058 0.942 27 H 0.144 0.856 28 H 0.174 0.826 29 H 0.194 0.806 30 H 0.208 0.792 31 H 0.051 0.949 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.645 -15.607 5.124 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.049 3.951 10 N -0.204 5.204 11 C -0.127 4.127 12 C 0.011 3.989 13 O -0.226 6.226 14 C 0.000 4.000 15 C -0.164 4.164 16 C -0.137 4.137 17 C -0.066 4.066 18 N -0.219 5.219 19 C 0.085 3.915 20 F -0.108 7.108 21 C -0.127 4.127 22 H 0.074 0.926 23 H 0.026 0.974 24 H -0.011 1.011 25 H 0.136 0.864 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.192 0.808 29 H 0.211 0.789 30 H 0.224 0.776 31 H 0.069 0.931 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.321 -15.799 5.302 21.335 hybrid contribution -1.043 1.581 0.088 1.896 sum 12.278 -14.218 5.390 19.544 Atomic orbital electron populations 1.70091 1.07894 1.28061 1.51403 1.25970 0.95761 1.03484 0.94493 0.85281 0.79056 0.78220 0.77761 1.18353 1.20236 1.20506 1.21433 0.93719 0.90933 1.50691 0.91602 1.19886 0.90979 0.90091 0.94131 1.68491 1.20891 1.01857 1.29138 1.24268 0.96171 0.93473 0.98754 1.24841 0.99646 0.91825 0.82579 1.86299 1.37164 1.61581 1.37560 1.20049 0.91319 0.94667 0.94004 1.22133 0.89996 1.01490 1.02783 1.22575 1.02605 0.94119 0.94355 1.23233 0.89681 0.98227 0.95477 1.67102 1.04222 1.18953 1.31588 1.17746 0.81237 0.99500 0.93002 1.91567 1.35134 1.95098 1.88983 1.24280 1.01830 0.94388 0.92237 0.92551 0.97398 1.01073 0.86387 0.92363 0.83898 0.80837 0.78925 0.77584 0.93091 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -29.91 8.84 25.60 0.23 -29.68 16 8 H 0.07 3.60 7.80 -2.91 -0.02 3.57 16 9 C 0.18 9.42 4.58 85.56 0.39 9.82 16 10 N -0.48 -20.08 6.25 -916.42 -5.73 -25.81 16 11 C 0.00 0.07 7.81 86.41 0.67 0.75 16 12 C 0.07 1.94 3.87 31.24 0.12 2.06 16 13 O -0.31 -9.93 10.04 -93.20 -0.94 -10.87 16 14 C 0.05 1.30 6.71 22.63 0.15 1.45 16 15 C -0.14 -2.44 9.11 22.55 0.21 -2.23 16 16 C -0.12 -1.37 10.10 22.35 0.23 -1.14 16 17 C 0.09 1.36 11.17 84.65 0.95 2.30 16 18 N -0.50 -12.60 10.37 -196.56 -2.04 -14.63 16 19 C 0.24 7.01 8.43 84.86 0.72 7.72 16 20 F -0.13 -4.36 17.14 44.97 0.77 -3.59 16 21 C 0.00 0.06 7.29 86.40 0.63 0.69 16 22 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H -0.03 -1.66 7.69 -2.39 -0.02 -1.68 16 25 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 26 H 0.06 2.22 7.79 -2.38 -0.02 2.20 16 27 H 0.14 2.99 6.06 -2.39 -0.01 2.98 16 28 H 0.17 2.32 6.07 -2.91 -0.02 2.31 16 29 H 0.19 0.51 8.06 -2.91 -0.02 0.48 16 30 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.05 2.14 7.78 -2.39 -0.02 2.12 16 32 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -72.11 283.34 0.26 -71.84 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 1.13 Total: 1.15 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.75 Total: -7.73 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -7.48 Total: -96.72 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -0.94 Total: -10.87 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.77 Total: -3.59 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.11 0.26 -71.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226187760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.527 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds