Wall clock time and date at job start Sun Mar 29 2020 23:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46858 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47388 * 240.00082 * 3 2 1 6 6 H 1.48501 * 109.46953 * 119.99885 * 3 2 1 7 7 C 1.38812 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99561 * 151.96877 * 7 2 1 9 9 N 1.36934 * 120.00404 * 331.97362 * 7 2 1 10 10 C 1.47421 * 125.64568 * 343.18775 * 9 7 2 11 11 C 1.54910 * 104.83090 * 204.09223 * 10 9 7 12 12 C 1.55158 * 101.58302 * 322.99048 * 11 10 9 13 13 H 1.09000 * 110.71828 * 276.96641 * 12 11 10 14 14 O 1.42902 * 110.72296 * 153.86468 * 12 11 10 15 15 C 1.35674 * 117.00078 * 150.00054 * 14 12 11 16 16 C 1.38839 * 119.66725 * 179.97438 * 15 14 12 17 17 C 1.38458 * 119.17467 * 179.97438 * 16 15 14 18 18 C 1.38706 * 118.51228 * 0.02562 * 17 16 15 19 19 C 1.38394 * 119.26396 * 359.97438 * 18 17 16 20 20 F 1.35101 * 119.61501 * 180.02562 * 19 18 17 21 21 N 1.32130 * 120.77219 * 359.74767 * 19 18 17 22 22 C 1.47021 * 125.64867 * 162.87654 * 9 7 2 23 23 H 0.97004 * 120.00411 * 173.95914 * 1 2 3 24 24 H 1.09000 * 110.37006 * 322.92870 * 10 9 7 25 25 H 1.09005 * 110.36937 * 85.25438 * 10 9 7 26 26 H 1.08994 * 111.00813 * 81.06389 * 11 10 9 27 27 H 1.09000 * 111.00277 * 204.91727 * 11 10 9 28 28 H 1.08001 * 120.41474 * 359.95915 * 16 15 14 29 29 H 1.07992 * 120.74726 * 180.02562 * 17 16 15 30 30 H 1.07996 * 120.37344 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.88500 * 298.39913 * 22 9 7 32 32 H 1.08999 * 109.87960 * 59.56226 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 -1.2124 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9952 -1.2572 -0.4390 9 7 1.4460 -2.3183 0.5582 10 6 0.2981 -2.3299 1.4832 11 6 0.4419 -3.6524 2.2770 12 6 0.9751 -4.6156 1.1837 13 1 0.1546 -5.0124 0.5858 14 8 1.7307 -5.6773 1.7700 15 6 1.7288 -6.8675 1.1187 16 6 2.4451 -7.9369 1.6391 17 6 2.4356 -9.1470 0.9663 18 6 1.7066 -9.2450 -0.2097 19 6 1.0154 -8.1384 -0.6714 20 9 0.3027 -8.2261 -1.8158 21 7 1.0400 -6.9988 -0.0032 22 6 1.8806 -3.7039 0.3287 23 1 -0.4851 -0.8354 -0.0884 24 1 0.3460 -1.4753 2.1580 25 1 -0.6385 -2.3220 0.9256 26 1 1.1620 -3.5450 3.0880 27 1 -0.5237 -3.9876 2.6558 28 1 3.0029 -7.8263 2.5573 29 1 2.9834 -9.9955 1.3485 30 1 1.6780 -10.1746 -0.7586 31 1 1.7737 -3.9561 -0.7263 32 1 2.9194 -3.8224 0.6369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226189505.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:35 Heat of formation + Delta-G solvation = -35.798645 kcal Electronic energy + Delta-G solvation = -18116.538143 eV Core-core repulsion = 14992.244999 eV Total energy + Delta-G solvation = -3124.293144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.13064 -41.76375 -39.86043 -38.03098 -34.56586 -33.70295 -31.58960 -30.89507 -29.20347 -26.48689 -24.77080 -24.53632 -22.28968 -22.05425 -19.94220 -19.70627 -18.75288 -17.48766 -17.20874 -17.09160 -16.63108 -16.53198 -15.75438 -15.65187 -15.21363 -15.12903 -14.45078 -14.27499 -14.07986 -13.68295 -13.33294 -13.11383 -12.74085 -12.63787 -12.53375 -11.92190 -11.85166 -11.81508 -11.62262 -11.07031 -10.93408 -10.60592 -9.58048 -9.14564 -8.41208 -5.44015 -0.11622 0.12258 1.56067 1.64403 1.76451 1.84755 2.40203 2.50494 2.61581 3.10957 3.36909 3.49306 3.52435 3.72107 3.86713 3.97483 4.08709 4.16417 4.30938 4.46133 4.65972 4.68926 4.75995 4.77294 4.90801 4.92772 5.05797 5.13599 5.44188 5.56607 6.05305 6.22049 6.48572 6.78181 7.60091 8.15942 8.90216 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.037938 B = 0.004818 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.864632 B = 5809.622441 C = 6017.297307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.073 4.073 3 Si 1.121 2.879 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.357 4.357 8 H 0.058 0.942 9 N -0.621 5.621 10 C 0.147 3.853 11 C -0.113 4.113 12 C 0.096 3.904 13 H 0.089 0.911 14 O -0.294 6.294 15 C 0.329 3.671 16 C -0.195 4.195 17 C 0.003 3.997 18 C -0.215 4.215 19 C 0.313 3.687 20 F -0.124 7.124 21 N -0.613 5.613 22 C 0.126 3.874 23 H 0.254 0.746 24 H 0.037 0.963 25 H 0.012 0.988 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.175 0.825 29 H 0.206 0.794 30 H 0.184 0.816 31 H 0.009 0.991 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -21.172 5.004 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.269 4.269 3 Si 0.944 3.056 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.485 4.485 8 H 0.076 0.924 9 N -0.350 5.350 10 C 0.022 3.978 11 C -0.151 4.151 12 C 0.039 3.961 13 H 0.107 0.893 14 O -0.200 6.200 15 C 0.151 3.849 16 C -0.215 4.215 17 C -0.021 4.021 18 C -0.236 4.236 19 C 0.161 3.839 20 F -0.103 7.103 21 N -0.343 5.343 22 C 0.000 4.000 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.192 0.808 29 H 0.223 0.777 30 H 0.201 0.799 31 H 0.027 0.973 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.218 -18.682 4.914 19.772 hybrid contribution -0.083 -1.788 -0.829 1.973 sum 4.135 -20.470 4.085 21.279 Atomic orbital electron populations 1.70909 1.07562 1.29413 1.50225 1.27331 0.96498 1.04540 0.98501 0.82799 0.73842 0.71496 0.77453 1.21258 1.20045 1.20323 1.20032 0.99540 0.89295 1.39610 0.92405 1.44731 1.37249 1.01145 1.51837 1.21482 0.89706 0.95703 0.90883 1.22893 1.02522 0.92802 0.96865 1.23101 0.93039 0.84685 0.95318 0.89312 1.86303 1.68117 1.17671 1.47922 1.19948 0.90836 0.87254 0.86869 1.21579 1.03694 0.91196 1.05035 1.21898 0.92540 0.97187 0.90504 1.22093 1.01646 0.99195 1.00697 1.18193 0.92209 0.90198 0.83275 1.91606 1.76327 1.96036 1.46370 1.66231 1.26888 1.29511 1.11670 1.21620 0.96940 0.85389 0.96028 0.93533 0.94449 0.96997 0.89368 0.87776 0.80775 0.77733 0.79879 0.97314 0.95152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.37 12.93 21.65 0.28 -59.09 16 2 C -0.07 -4.32 5.09 84.86 0.43 -3.89 16 3 Si 1.12 52.39 30.00 68.60 2.06 54.45 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.36 -21.52 10.02 84.03 0.84 -20.68 16 8 H 0.06 3.48 7.97 -2.91 -0.02 3.46 16 9 N -0.62 -34.37 3.29 -691.97 -2.28 -36.65 16 10 C 0.15 7.29 5.30 86.86 0.46 7.75 16 11 C -0.11 -4.24 6.81 31.99 0.22 -4.03 16 12 C 0.10 3.76 3.24 31.79 0.10 3.86 16 13 H 0.09 3.62 6.95 -2.39 -0.02 3.60 16 14 O -0.29 -9.98 9.85 -89.92 -0.89 -10.87 16 15 C 0.33 9.70 7.48 84.77 0.63 10.34 16 16 C -0.19 -3.64 10.04 22.47 0.23 -3.42 16 17 C 0.00 0.04 10.16 22.43 0.23 0.27 16 18 C -0.22 -3.42 10.08 22.42 0.23 -3.19 16 19 C 0.31 8.33 8.41 84.69 0.71 9.04 16 20 F -0.12 -3.53 17.29 44.97 0.78 -2.76 16 21 N -0.61 -20.16 8.64 -310.00 -2.68 -22.83 16 22 C 0.13 6.03 7.03 86.73 0.61 6.63 16 23 H 0.25 16.41 6.06 -92.71 -0.56 15.85 16 24 H 0.04 1.97 7.95 -2.39 -0.02 1.96 16 25 H 0.01 0.64 6.81 -2.38 -0.02 0.63 16 26 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 27 H 0.10 3.24 8.14 -2.39 -0.02 3.23 16 28 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 29 H 0.21 0.32 8.06 -2.91 -0.02 0.29 16 30 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.03 1.45 8.05 -2.39 -0.02 1.43 16 Total: -1.00 -75.89 279.36 3.30 -72.59 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.34 Total: 2.46 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.69 Total: 2.69 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -4.67 Total: -118.57 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.89 Total: -10.87 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.06 Total: 54.45 kcal Total: -75.89 3.30 -72.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226189505.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.794 kcal (2) G-P(sol) polarization free energy of solvation -75.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds