Wall clock time and date at job start Sun Mar 29 2020 23:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00050 * 2 1 4 4 H 1.48506 * 109.47045 * 240.00309 * 3 2 1 5 5 H 1.48496 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47021 * 120.00525 * 3 2 1 7 7 C 1.38811 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00474 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.65059 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.26879 * 178.90335 * 10 9 7 12 12 C 1.55150 * 102.94526 * 337.80853 * 11 10 9 13 13 H 1.09002 * 111.00319 * 277.39194 * 12 11 10 14 14 O 1.42899 * 111.00548 * 153.57488 * 12 11 10 15 15 C 1.35959 * 117.00043 * 156.06709 * 14 12 11 16 16 C 1.39182 * 120.44309 * 5.44775 * 15 14 12 17 17 C 1.38448 * 118.41070 * 180.02562 * 16 15 14 18 18 C 1.38564 * 119.19402 * 359.97438 * 17 16 15 19 19 F 1.35097 * 119.58999 * 180.02562 * 18 17 16 20 20 N 1.31995 * 120.81473 * 0.02734 * 18 17 16 21 21 C 1.31922 * 121.75082 * 359.97438 * 20 18 17 22 22 C 1.47471 * 125.62591 * 179.97438 * 9 7 2 23 23 H 0.97006 * 119.99733 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.87560 * 59.48640 * 10 9 7 25 25 H 1.09002 * 110.01151 * 298.39370 * 10 9 7 26 26 H 1.09003 * 110.71473 * 219.44597 * 11 10 9 27 27 H 1.08994 * 110.71792 * 96.17718 * 11 10 9 28 28 H 1.08010 * 120.79483 * 0.03150 * 16 15 14 29 29 H 1.08001 * 120.40954 * 180.02562 * 17 16 15 30 30 H 1.07994 * 119.64551 * 179.72873 * 21 20 18 31 31 H 1.09005 * 110.35060 * 85.32483 * 22 9 7 32 32 H 1.09000 * 110.40487 * 322.99042 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 -0.0005 11 6 -0.4485 -4.0441 -0.0287 12 6 0.8518 -4.6555 -0.6141 13 1 0.8564 -4.5952 -1.7024 14 8 1.0247 -6.0053 -0.1778 15 6 1.7910 -6.8128 -0.9582 16 6 2.4619 -6.2961 -2.0628 17 6 3.2301 -7.1564 -2.8286 18 6 3.3058 -8.4934 -2.4727 19 9 4.0535 -9.3398 -3.2141 20 7 2.6563 -8.9502 -1.4183 21 6 1.9145 -8.1616 -0.6645 22 6 1.9341 -3.7313 -0.0016 23 1 -0.4850 0.8401 0.0004 24 1 -0.5576 -2.0512 -0.8837 25 1 -0.5567 -2.0847 0.9005 26 1 -1.2986 -4.2508 -0.6790 27 1 -0.6317 -4.4189 0.9782 28 1 2.3850 -5.2490 -2.3163 29 1 3.7646 -6.7897 -3.6925 30 1 1.3941 -8.5724 0.1880 31 1 2.1671 -4.0427 1.0167 32 1 2.8335 -3.7406 -0.6173 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226693980.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:49 Heat of formation + Delta-G solvation = -28.699981 kcal Electronic energy + Delta-G solvation = -17984.181628 eV Core-core repulsion = 14860.196306 eV Total energy + Delta-G solvation = -3123.985323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.99419 -41.73866 -39.82871 -37.91682 -34.33199 -33.54386 -31.57153 -30.69528 -29.10705 -26.57457 -25.17189 -24.24462 -22.14499 -21.82227 -19.55543 -19.14420 -18.79900 -18.32786 -17.16756 -16.80172 -16.45246 -16.05480 -15.71595 -15.55689 -15.12038 -14.68007 -14.39340 -14.16990 -14.05079 -13.81011 -13.55715 -13.06867 -12.92914 -12.65190 -12.17221 -12.08869 -11.93163 -11.68710 -11.52251 -11.00283 -10.87416 -10.71880 -9.39889 -8.95840 -7.87623 -5.24679 -0.11984 -0.03072 1.47999 1.50353 1.56723 1.88471 2.47242 2.49893 2.60816 3.31748 3.39784 3.54032 3.58055 3.72370 3.86663 3.92689 4.02534 4.08326 4.51559 4.60433 4.68462 4.75105 4.81013 4.92490 4.94700 5.01829 5.37459 5.42815 5.59653 5.71664 6.10108 6.18983 6.54767 7.06552 7.71743 8.34317 9.22330 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.038671 B = 0.004615 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.880764 B = 6066.260225 C = 6580.695883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.184 3.816 11 C -0.122 4.122 12 C 0.080 3.920 13 H 0.098 0.902 14 O -0.294 6.294 15 C 0.072 3.928 16 C -0.139 4.139 17 C -0.137 4.137 18 C 0.243 3.757 19 F -0.121 7.121 20 N -0.498 5.498 21 C 0.106 3.894 22 C 0.116 3.884 23 H 0.249 0.751 24 H 0.024 0.976 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.161 0.839 29 H 0.177 0.823 30 H 0.195 0.805 31 H 0.027 0.973 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.941 -13.486 -4.555 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.059 3.941 11 C -0.161 4.161 12 C 0.023 3.977 13 H 0.116 0.884 14 O -0.205 6.205 15 C 0.024 3.976 16 C -0.165 4.165 17 C -0.158 4.158 18 C 0.090 3.910 19 F -0.100 7.100 20 N -0.213 5.213 21 C -0.052 4.052 22 C -0.010 4.010 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.179 0.821 29 H 0.194 0.806 30 H 0.211 0.789 31 H 0.045 0.955 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.895 -14.216 -4.207 15.105 hybrid contribution 0.447 1.915 -0.317 1.992 sum 3.342 -12.301 -4.523 13.525 Atomic orbital electron populations 1.70137 1.06245 1.25594 1.57752 1.25624 0.96592 1.00930 1.02142 0.85163 0.77184 0.78777 0.78253 1.20068 1.22019 1.20509 1.19400 0.91070 0.83400 1.43799 0.89829 1.44601 1.02477 1.00660 1.87357 1.20969 0.83740 0.90609 0.98797 1.22867 0.95953 0.94849 1.02384 1.23650 0.96964 0.77650 0.99427 0.88391 1.86139 1.64649 1.22098 1.47619 1.20337 0.93088 0.92394 0.91815 1.21947 0.97407 1.02307 0.94841 1.21892 1.00485 0.90804 1.02585 1.18237 0.95054 0.86638 0.91042 1.91588 1.73200 1.71500 1.73703 1.67031 1.08677 1.39995 1.05565 1.22142 0.96932 0.86676 0.99470 1.22068 0.95366 0.85222 0.98336 0.94187 0.95788 0.96735 0.88561 0.90142 0.82124 0.80566 0.78851 0.95533 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.90 10.31 21.65 0.22 -54.68 16 2 C -0.06 -3.25 5.49 84.86 0.47 -2.79 16 3 Si 0.98 44.08 29.55 68.60 2.03 46.11 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.25 -13.34 10.28 84.03 0.86 -12.48 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -30.40 3.40 -691.80 -2.35 -32.74 16 10 C 0.18 8.52 5.37 86.73 0.47 8.99 16 11 C -0.12 -4.10 6.69 31.78 0.21 -3.89 16 12 C 0.08 2.47 2.82 31.99 0.09 2.56 16 13 H 0.10 2.75 6.26 -2.39 -0.01 2.73 16 14 O -0.29 -8.08 9.96 -93.09 -0.93 -9.00 16 15 C 0.07 1.76 6.70 22.58 0.15 1.91 16 16 C -0.14 -3.08 9.05 22.55 0.20 -2.88 16 17 C -0.14 -2.76 10.08 22.40 0.23 -2.53 16 18 C 0.24 5.87 8.41 84.75 0.71 6.59 16 19 F -0.12 -2.94 17.29 44.97 0.78 -2.16 16 20 N -0.50 -12.81 10.37 -196.57 -2.04 -14.85 16 21 C 0.11 2.43 11.13 84.76 0.94 3.37 16 22 C 0.12 4.41 6.89 86.86 0.60 5.01 16 23 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 24 H 0.02 1.23 7.38 -2.39 -0.02 1.21 16 25 H 0.01 0.76 7.51 -2.39 -0.02 0.74 16 26 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.16 3.42 5.85 -2.91 -0.02 3.40 16 29 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 1.91 7.87 -2.39 -0.02 1.89 16 Total: -1.00 -62.85 276.64 3.78 -59.07 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.14 Total: 4.41 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 4.93 Total: 3.85 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.16 Total: -102.27 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.93 Total: -9.00 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -62.85 3.78 -59.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226693980.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.367 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds