Wall clock time and date at job start Sun Mar 29 2020 23:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48494 * 109.46957 * 239.99574 * 3 2 1 5 5 H 1.48491 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46718 * 119.99941 * 3 2 1 7 7 C 1.38814 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.47016 * 125.64775 * 0.04383 * 9 7 2 11 11 C 1.54365 * 107.28904 * 181.05305 * 10 9 7 12 12 C 1.55158 * 102.92194 * 22.14110 * 11 10 9 13 13 H 1.09006 * 111.00553 * 82.63212 * 12 11 10 14 14 O 1.42893 * 111.00624 * 206.45474 * 12 11 10 15 15 C 1.35678 * 116.99917 * 206.81901 * 14 12 11 16 16 C 1.38803 * 119.67400 * 180.02562 * 15 14 12 17 17 C 1.38660 * 119.08262 * 179.97438 * 16 15 14 18 18 F 1.35105 * 120.78258 * 180.02562 * 17 16 15 19 19 C 1.39120 * 118.43329 * 359.75073 * 17 16 15 20 20 C 1.37934 * 119.25437 * 0.49573 * 19 17 16 21 21 N 1.32012 * 120.86113 * 359.49278 * 20 19 17 22 22 C 1.47418 * 125.64603 * 180.02562 * 9 7 2 23 23 H 0.97003 * 120.00025 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.88544 * 300.44030 * 10 9 7 25 25 H 1.08998 * 109.88300 * 61.44873 * 10 9 7 26 26 H 1.09001 * 110.71015 * 263.79164 * 11 10 9 27 27 H 1.09001 * 110.75806 * 140.50713 * 11 10 9 28 28 H 1.08002 * 120.45548 * 359.94963 * 16 15 14 29 29 H 1.07998 * 120.37387 * 180.26705 * 19 17 16 30 30 H 1.08002 * 119.57225 * 179.77781 * 20 19 17 31 31 H 1.08999 * 110.36895 * 37.07740 * 22 9 7 32 32 H 1.09000 * 110.46347 * 274.79350 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4490 -4.0445 0.0263 12 6 0.8517 -4.6563 0.6104 13 1 0.8569 -4.5971 1.6988 14 8 1.0247 -6.0055 0.1726 15 6 1.7397 -6.8283 0.9805 16 6 1.9423 -8.1502 0.6088 17 6 2.6753 -8.9802 1.4434 18 9 2.8938 -10.2724 1.1151 19 6 3.1854 -8.4494 2.6238 20 6 2.9392 -7.1272 2.9300 21 7 2.2373 -6.3625 2.1144 22 6 1.9334 -3.7311 -0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 -0.5579 -2.0524 0.8827 25 1 -0.5544 -2.0819 -0.9015 26 1 -0.6327 -4.4184 -0.9809 27 1 -1.2987 -4.2522 0.6767 28 1 1.5342 -8.5272 -0.3174 29 1 3.7644 -9.0666 3.2948 30 1 3.3296 -6.7108 3.8469 31 1 2.8326 -3.7406 0.6155 32 1 2.1683 -4.0431 -1.0182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226765641.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:55 Heat of formation + Delta-G solvation = -13.575364 kcal Electronic energy + Delta-G solvation = -17973.529467 eV Core-core repulsion = 14850.199997 eV Total energy + Delta-G solvation = -3123.329470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.27108 -40.56816 -38.30150 -36.21436 -32.39048 -32.07495 -30.65740 -29.19161 -27.30510 -24.66908 -23.89412 -23.15417 -20.46578 -20.13884 -18.71966 -17.53983 -16.81012 -16.46483 -16.08936 -15.92168 -15.07723 -14.86725 -14.58587 -14.14325 -14.01722 -13.72448 -12.94809 -12.64764 -12.35633 -11.97762 -11.93621 -11.59538 -10.96237 -10.79783 -10.35084 -10.26473 -10.10373 -10.00569 -9.75267 -9.70127 -9.62469 -8.64070 -8.58960 -6.86797 -5.72660 -3.06872 0.88181 0.99831 2.99549 3.41398 3.45290 3.46771 3.56287 3.92907 4.20969 4.49996 4.71708 4.85275 4.91448 5.28342 5.41041 5.49003 5.55522 5.64005 5.71852 5.73511 5.79291 6.12054 6.31392 6.42061 6.45183 6.63029 6.71173 7.43257 7.52497 7.56081 7.77637 7.79854 8.22822 9.19595 9.79327 10.44118 11.39224 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.044483 B = 0.004515 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.298896 B = 6199.828534 C = 6542.461122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.071 3.929 13 H 0.099 0.901 14 O -0.291 6.291 15 C 0.364 3.636 16 C -0.238 4.238 17 C 0.176 3.824 18 F -0.126 7.126 19 C -0.258 4.258 20 C 0.175 3.825 21 N -0.540 5.540 22 C 0.126 3.874 23 H 0.254 0.746 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.169 0.831 31 H 0.045 0.955 32 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -16.456 4.449 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.055 3.945 11 C -0.178 4.178 12 C 0.015 3.985 13 H 0.117 0.883 14 O -0.196 6.196 15 C 0.184 3.816 16 C -0.260 4.260 17 C 0.149 3.851 18 F -0.105 7.105 19 C -0.279 4.279 20 C 0.018 3.982 21 N -0.264 5.264 22 C 0.000 4.000 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.186 0.814 31 H 0.063 0.937 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.898 -15.422 4.360 16.286 hybrid contribution 0.690 -0.167 -0.175 0.731 sum 3.588 -15.589 4.185 16.535 Atomic orbital electron populations 1.69931 1.04908 1.25279 1.56951 1.24806 0.95749 0.97690 1.02063 0.86158 0.78435 0.82985 0.77938 1.21134 1.21542 1.21099 1.19021 0.90474 0.82146 1.44075 0.90371 1.44307 1.01647 0.99587 1.87367 1.21197 0.84500 0.87091 1.01730 1.23109 0.94855 0.99126 1.00707 1.23904 0.98152 0.75957 1.00513 0.88306 1.86278 1.65469 1.23568 1.44306 1.19568 0.87434 0.87774 0.86783 1.20928 1.08019 0.92726 1.04297 1.17552 0.95298 0.78559 0.93648 1.91542 1.92592 1.33905 1.92444 1.21963 1.08489 0.98607 0.98848 1.22383 0.90275 0.88743 0.96800 1.67507 1.14681 1.39231 1.05024 1.21792 0.94450 0.86329 0.97474 0.93606 0.93061 0.93208 0.91267 0.91397 0.83019 0.83572 0.81369 0.93661 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.31 55.49 0.57 -26.51 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.75 3.39 -170.06 -0.58 -16.32 16 10 C 0.18 4.40 5.38 -3.05 -0.02 4.38 16 11 C -0.14 -2.70 6.69 -24.87 -0.17 -2.87 16 12 C 0.07 1.37 3.28 -24.59 -0.08 1.28 16 13 H 0.10 1.92 7.05 -51.93 -0.37 1.56 16 14 O -0.29 -5.04 9.93 -18.74 -0.19 -5.22 16 15 C 0.36 5.57 7.48 -17.14 -0.13 5.45 16 16 C -0.24 -3.05 10.04 -39.22 -0.39 -3.44 16 17 C 0.18 2.01 7.39 -39.10 -0.29 1.72 16 18 F -0.13 -1.40 17.30 2.25 0.04 -1.36 16 19 C -0.26 -2.56 10.10 -39.37 -0.40 -2.95 16 20 C 0.17 1.94 11.17 -17.59 -0.20 1.74 16 21 N -0.54 -8.09 8.67 -13.36 -0.12 -8.20 16 22 C 0.13 2.79 6.97 -2.54 -0.02 2.77 16 23 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.05 1.36 7.38 -51.93 -0.38 0.98 16 25 H 0.05 1.33 7.50 -51.93 -0.39 0.94 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -30.69 279.56 -6.66 -37.35 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -3.64 Total: -2.22 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.94 Total: 1.17 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.12 Total: -51.03 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.19 Total: -5.22 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.69 -6.66 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226765641.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.779 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds