Wall clock time and date at job start Sun Mar 29 2020 23:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00274 * 2 1 4 4 H 1.48497 * 109.47233 * 270.00518 * 3 2 1 5 5 H 1.48497 * 109.46841 * 30.00301 * 3 2 1 6 6 H 1.48497 * 109.46835 * 150.00095 * 3 2 1 7 7 C 1.37885 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99536 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.46783 * 179.97438 * 9 7 2 11 11 C 1.47966 * 111.00279 * 169.99585 * 10 9 7 12 12 C 1.53932 * 86.18389 * 222.41716 * 11 10 9 13 13 O 1.42900 * 113.73290 * 138.07880 * 12 11 10 14 14 C 1.35907 * 116.99911 * 157.70147 * 13 12 11 15 15 C 1.38764 * 120.45851 * 185.55866 * 14 13 12 16 16 N 1.31802 * 120.73989 * 180.26759 * 15 14 13 17 17 C 1.31863 * 121.80255 * 0.02562 * 16 15 14 18 18 C 1.38448 * 120.85153 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.41637 * 179.97438 * 18 17 16 20 20 C 1.38784 * 119.17062 * 0.02562 * 18 17 16 21 21 C 1.47966 * 111.00062 * 70.64146 * 10 9 7 22 22 H 0.97005 * 119.99914 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47487 * 59.99635 * 9 7 2 24 24 H 1.09000 * 109.47032 * 299.98929 * 9 7 2 25 25 H 1.09000 * 113.75765 * 108.10060 * 11 10 9 26 26 H 1.09003 * 113.75444 * 336.74030 * 11 10 9 27 27 H 1.08993 * 113.73711 * 269.25734 * 12 11 10 28 28 H 1.08008 * 119.63348 * 0.24703 * 15 14 13 29 29 H 1.08004 * 119.57438 * 180.02562 * 17 16 15 30 30 H 1.08006 * 120.82231 * 180.02562 * 20 18 17 31 31 H 1.08991 * 113.76055 * 23.25985 * 21 10 9 32 32 H 1.09005 * 113.75690 * 251.89916 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 5.4605 -2.6257 -0.2395 12 6 5.1656 -3.8137 -1.1729 13 8 5.9125 -3.7873 -2.3909 14 6 6.0788 -4.9706 -3.0384 15 6 6.8866 -5.0490 -4.1639 16 7 7.0477 -6.1926 -4.7992 17 6 6.4546 -7.2999 -4.3981 18 6 5.6332 -7.3017 -3.2835 19 9 5.0295 -8.4412 -2.8807 20 6 5.4370 -6.1181 -2.5859 21 6 3.7466 -3.2314 -1.3036 22 1 -0.4850 0.8401 0.0004 23 1 3.8745 -0.6809 0.8904 24 1 3.8751 -0.6799 -0.8895 25 1 6.0418 -2.8941 0.6426 26 1 5.8490 -1.7476 -0.7554 27 1 5.1999 -4.7823 -0.6745 28 1 7.3889 -4.1630 -4.5236 29 1 6.6122 -8.2174 -4.9456 30 1 4.8021 -6.0892 -1.7126 31 1 3.6338 -2.5307 -2.1307 32 1 2.9585 -3.9838 -1.2717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226841003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:27 Heat of formation + Delta-G solvation = -1.542476 kcal Electronic energy + Delta-G solvation = -17724.229029 eV Core-core repulsion = 14601.421344 eV Total energy + Delta-G solvation = -3122.807685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.23603 -40.91191 -39.50950 -37.33265 -32.88880 -32.13057 -30.75533 -29.64510 -26.14130 -25.67277 -24.03652 -23.41641 -21.33831 -19.72177 -18.87059 -17.56497 -17.11148 -16.96487 -16.54585 -16.16846 -15.47107 -15.12471 -14.74815 -14.37770 -14.03501 -13.72355 -13.47954 -12.92677 -12.79259 -12.45699 -12.34859 -12.19438 -11.79965 -11.10028 -10.83966 -10.57969 -10.12961 -10.01732 -9.88603 -9.76602 -9.40364 -8.70684 -8.63221 -8.21789 -6.15413 -4.14994 0.67021 0.85689 2.87853 3.21394 3.29753 3.30517 3.36318 3.73771 4.26145 4.29770 4.32962 4.39024 4.49228 4.54197 4.67861 4.90144 5.16038 5.28674 5.49452 5.54990 5.66078 5.74681 5.82210 6.01513 6.12634 6.22431 6.28060 6.63358 7.07648 7.11761 7.55713 7.56924 7.63450 8.46934 8.90988 9.44775 10.97544 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.037514 B = 0.004366 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.218006 B = 6411.854106 C = 6691.477261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.462 5.462 11 C 0.006 3.994 12 C 0.037 3.963 13 O -0.291 6.291 14 C 0.123 3.877 15 C 0.059 3.941 16 N -0.420 5.420 17 C 0.023 3.977 18 C 0.093 3.907 19 F -0.127 7.127 20 C -0.207 4.207 21 C 0.010 3.990 22 H 0.265 0.735 23 H 0.035 0.965 24 H -0.005 1.005 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.157 0.843 31 H 0.082 0.918 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.961 -11.350 -6.344 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.005 3.995 10 N -0.186 5.186 11 C -0.123 4.123 12 C -0.020 4.020 13 O -0.201 6.201 14 C 0.074 3.926 15 C -0.101 4.101 16 N -0.128 5.128 17 C -0.135 4.135 18 C 0.071 3.929 19 F -0.106 7.106 20 C -0.234 4.234 21 C -0.119 4.119 22 H 0.075 0.925 23 H 0.053 0.947 24 H 0.013 0.987 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.188 0.812 29 H 0.185 0.815 30 H 0.174 0.826 31 H 0.100 0.900 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.080 -11.339 -6.487 19.207 hybrid contribution -0.286 1.092 0.328 1.176 sum 13.794 -10.247 -6.159 18.254 Atomic orbital electron populations 1.69890 1.06174 1.27054 1.50367 1.24909 0.94768 0.98956 0.94512 0.86841 0.80362 0.83865 0.78601 1.20181 1.20958 1.19108 1.20922 0.88373 0.94924 1.51340 0.90260 1.20695 0.97871 0.85009 0.95947 1.68551 1.02707 1.19307 1.28043 1.24236 0.94690 0.96179 0.97187 1.25124 0.92991 1.00887 0.82970 1.86275 1.70046 1.26765 1.37040 1.20074 0.93742 0.85532 0.93259 1.22344 0.98569 0.96907 0.92266 1.67748 1.19014 0.97959 1.28124 1.22737 0.97044 0.98270 0.95403 1.18596 0.95863 0.82460 0.95933 1.91539 1.81281 1.47756 1.90001 1.21873 1.05354 0.91931 1.04230 1.24278 0.94398 0.99212 0.94038 0.92484 0.94691 0.98693 0.88866 0.90510 0.87657 0.81161 0.81518 0.82571 0.89974 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.42 9.40 -34.44 -0.32 -14.75 16 8 H 0.08 2.41 8.05 -52.49 -0.42 1.99 16 9 C 0.13 3.08 3.65 -4.98 -0.02 3.07 16 10 N -0.46 -9.13 6.25 -239.95 -1.50 -10.63 16 11 C 0.01 0.09 7.81 -2.77 -0.02 0.07 16 12 C 0.04 0.51 3.87 -25.80 -0.10 0.41 16 13 O -0.29 -3.94 10.17 -19.45 -0.20 -4.13 16 14 C 0.12 1.50 6.70 -39.09 -0.26 1.24 16 15 C 0.06 0.66 11.14 -17.37 -0.19 0.47 16 16 N -0.42 -4.86 10.35 -13.06 -0.14 -5.00 16 17 C 0.02 0.24 11.17 -17.46 -0.19 0.05 16 18 C 0.09 1.03 7.34 -39.30 -0.29 0.74 16 19 F -0.13 -1.43 17.28 2.25 0.04 -1.39 16 20 C -0.21 -2.40 9.10 -39.08 -0.36 -2.76 16 21 C 0.01 0.17 7.29 -2.76 -0.02 0.15 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 24 H 0.00 -0.11 7.12 -51.93 -0.37 -0.48 16 25 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.18 7.79 -51.93 -0.40 0.77 16 27 H 0.11 1.29 6.05 -51.93 -0.31 0.97 16 28 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.17 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.16 1.70 6.06 -52.48 -0.32 1.38 16 31 H 0.08 1.54 7.78 -51.93 -0.40 1.14 16 32 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 279.92 15.07 4.22 4.22 Total: -1.00 -30.35 279.92 -6.81 -37.16 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.46 Total: -0.88 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.88 Total: -9.38 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.86 Total: -41.92 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.20 Total: -4.13 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.35 -6.81 -37.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226841003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.620 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds