Wall clock time and date at job start Sun Mar 29 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48491 * 109.47398 * 95.30486 * 3 2 1 5 5 H 1.48507 * 109.46925 * 215.30683 * 3 2 1 6 6 H 1.48502 * 109.46776 * 335.30121 * 3 2 1 7 7 C 1.38816 * 119.99698 * 180.27466 * 2 1 3 8 8 H 1.07997 * 120.00292 * 28.77711 * 7 2 1 9 9 N 1.36942 * 119.99484 * 208.77250 * 7 2 1 10 10 C 1.47016 * 125.65288 * 9.86482 * 9 7 2 11 11 C 1.54317 * 107.27340 * 181.02187 * 10 9 7 12 12 C 1.55159 * 102.94305 * 22.19881 * 11 10 9 13 13 H 1.08993 * 111.00540 * 82.56701 * 12 11 10 14 14 O 1.42898 * 111.00519 * 206.38942 * 12 11 10 15 15 C 1.35311 * 116.99698 * 210.00119 * 14 12 11 16 16 N 1.32905 * 120.03250 * 359.97438 * 15 14 12 17 17 C 1.32153 * 120.06398 * 179.97438 * 16 15 14 18 18 N 1.32187 * 120.13491 * 0.02562 * 17 16 15 19 19 C 1.32880 * 120.06201 * 359.97125 * 18 17 16 20 20 O 1.35310 * 120.02984 * 180.02562 * 19 18 17 21 21 N 1.32682 * 120.02929 * 179.72246 * 15 14 12 22 22 C 1.47425 * 125.64203 * 189.56318 * 9 7 2 23 23 H 0.96994 * 119.99751 * 184.81364 * 1 2 3 24 24 H 1.09000 * 109.88642 * 300.44385 * 10 9 7 25 25 H 1.09000 * 109.87745 * 61.45131 * 10 9 7 26 26 H 1.09003 * 110.71941 * 140.56100 * 11 10 9 27 27 H 1.09004 * 110.72058 * 263.65748 * 11 10 9 28 28 H 1.08002 * 119.93228 * 179.97438 * 17 16 15 29 29 H 0.96698 * 114.00271 * 90.00075 * 20 19 18 30 30 H 1.09000 * 110.36411 * 274.74361 * 22 9 7 31 31 H 1.08996 * 110.37033 * 37.07132 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6099 1.9817 1.3940 5 1 3.4873 1.4751 -0.8092 6 1 1.3961 2.6824 -0.5850 7 6 2.0102 -1.2022 -0.0058 8 1 1.5703 -2.0776 -0.4602 9 7 3.2528 -1.2781 0.5647 10 6 3.8821 -0.2364 1.3896 11 6 5.2817 -0.7504 1.7875 12 6 5.5853 -1.8116 0.6971 13 1 5.9701 -1.3424 -0.2083 14 8 6.4941 -2.8009 1.1840 15 6 7.3134 -3.3819 0.2772 16 7 7.2494 -3.0254 -1.0015 17 6 8.0496 -3.5920 -1.8876 18 7 8.9153 -4.5149 -1.5054 19 6 8.9838 -4.8752 -0.2282 20 8 9.8706 -5.8195 0.1624 21 7 8.1848 -4.3043 0.6647 22 6 4.1785 -2.4206 0.4586 23 1 -0.4849 -0.8370 0.0705 24 1 3.9752 0.6854 0.8153 25 1 3.2826 -0.0580 2.2822 26 1 6.0130 0.0572 1.7539 27 1 5.2581 -1.2064 2.7773 28 1 7.9955 -3.3010 -2.9263 29 1 10.7330 -5.4665 0.4206 30 1 3.9508 -3.1654 1.2212 31 1 4.1212 -2.8643 -0.5353 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229610709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:38 Heat of formation + Delta-G solvation = 42.356049 kcal Electronic energy + Delta-G solvation = -18214.947549 eV Core-core repulsion = 15113.963409 eV Total energy + Delta-G solvation = -3100.984140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07391 -39.50405 -38.01609 -36.83146 -33.94677 -33.02134 -32.45825 -29.73982 -28.25672 -25.43199 -25.07111 -23.74166 -21.30584 -20.64267 -19.90344 -19.11981 -18.23194 -17.49932 -16.66471 -15.96455 -15.61578 -15.05508 -14.58283 -14.47117 -13.92680 -13.60358 -13.37348 -13.05994 -12.66346 -12.57880 -12.03099 -11.43006 -11.22838 -11.15961 -10.96115 -10.73344 -10.36753 -10.07253 -9.84471 -9.77989 -9.62341 -9.23880 -8.51878 -7.18417 -6.43323 -3.25615 0.41889 0.66450 1.96596 2.83501 3.38964 3.40029 3.48936 3.53547 3.66548 3.97502 4.57775 4.69476 4.81131 4.90121 5.16764 5.27683 5.32749 5.43421 5.71644 5.81310 5.97435 6.02892 6.24744 6.33232 6.39317 6.43333 6.64137 6.89886 7.01981 7.59208 7.88771 8.27114 8.94522 9.48765 10.14253 11.05884 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045544 B = 0.004937 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.647657 B = 5670.088274 C = 5754.368013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.010 4.010 3 Si 1.052 2.948 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.122 3.878 11 C -0.123 4.123 12 C 0.067 3.933 13 H 0.110 0.890 14 O -0.268 6.268 15 C 0.572 3.428 16 N -0.601 5.601 17 C 0.403 3.597 18 N -0.590 5.590 19 C 0.576 3.424 20 O -0.449 6.449 21 N -0.575 5.575 22 C 0.126 3.874 23 H 0.266 0.734 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.220 0.780 29 H 0.420 0.580 30 H 0.036 0.964 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.657 -5.153 -0.617 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.211 4.211 3 Si 0.884 3.116 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.331 5.331 10 C -0.003 4.003 11 C -0.162 4.162 12 C 0.010 3.990 13 H 0.128 0.872 14 O -0.164 6.164 15 C 0.263 3.737 16 N -0.338 5.338 17 C 0.106 3.894 18 N -0.328 5.328 19 C 0.263 3.737 20 O -0.253 6.253 21 N -0.320 5.320 22 C -0.001 4.001 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.236 0.764 29 H 0.281 0.719 30 H 0.054 0.946 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.843 -3.932 -0.394 19.253 hybrid contribution 0.646 -1.446 0.045 1.585 sum 19.489 -5.378 -0.349 20.221 Atomic orbital electron populations 1.70891 1.06176 1.29489 1.48191 1.25783 0.96083 1.00665 0.98617 0.83998 0.74342 0.76914 0.76311 1.21963 1.21941 1.22444 1.20028 0.89515 0.98349 1.38263 0.90269 1.44674 1.15959 1.14439 1.58050 1.21656 0.90638 0.92751 0.95284 1.22769 0.97988 0.96754 0.98640 1.24327 0.88423 0.87174 0.99098 0.87250 1.86147 1.45612 1.52304 1.32315 1.20628 0.84476 0.84221 0.84398 1.68853 1.29032 1.33385 1.02573 1.25210 0.81211 0.83108 0.99821 1.68732 1.27117 1.18563 1.18379 1.20084 0.87077 0.82983 0.83577 1.84670 1.26155 1.28379 1.86073 1.67675 1.10636 1.12746 1.40961 1.21952 0.86427 0.91945 0.99742 0.92441 0.94999 0.93255 0.90399 0.89802 0.76416 0.71876 0.94633 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 13.70 55.49 0.76 -27.25 16 2 C -0.01 -0.28 5.41 -17.43 -0.09 -0.38 16 3 Si 1.05 25.97 24.74 -169.99 -4.21 21.76 16 4 H -0.29 -6.72 6.76 56.52 0.38 -6.34 16 5 H -0.29 -6.86 6.86 56.52 0.39 -6.47 16 6 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.34 -9.53 10.41 -15.06 -0.16 -9.69 16 8 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 9 N -0.60 -14.76 3.28 -169.94 -0.56 -15.32 16 10 C 0.12 2.60 5.00 -3.07 -0.02 2.58 16 11 C -0.12 -2.06 6.68 -24.90 -0.17 -2.23 16 12 C 0.07 1.16 3.37 -24.46 -0.08 1.08 16 13 H 0.11 1.87 6.95 -51.93 -0.36 1.51 16 14 O -0.27 -4.48 10.00 -17.63 -0.18 -4.66 16 15 C 0.57 8.87 8.55 -90.43 -0.77 8.10 16 16 N -0.60 -8.40 8.79 -16.11 -0.14 -8.54 16 17 C 0.40 4.36 12.40 -91.51 -1.13 3.22 16 18 N -0.59 -6.87 10.53 -16.11 -0.17 -7.04 16 19 C 0.58 7.11 8.83 -90.42 -0.80 6.31 16 20 O -0.45 -4.21 13.63 -17.62 -0.24 -4.45 16 21 N -0.57 -8.48 10.55 -16.24 -0.17 -8.65 16 22 C 0.13 2.61 6.98 -2.41 -0.02 2.60 16 23 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 24 H 0.03 0.71 3.71 -51.93 -0.19 0.52 16 25 H 0.05 1.09 8.01 -51.93 -0.42 0.67 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.42 1.43 9.06 45.56 0.41 1.84 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -34.20 268.73 -6.37 -40.57 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -2.28 Total: -2.08 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -3.24 Total: 11.59 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -0.28 Total: -66.79 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.42 Total: -9.10 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.21 Total: 21.76 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.20 -6.37 -40.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229610709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.925 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds