Wall clock time and date at job start Sun Mar 29 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48491 * 109.47398 * 95.30486 * 3 2 1 5 5 H 1.48507 * 109.46925 * 215.30683 * 3 2 1 6 6 H 1.48502 * 109.46776 * 335.30121 * 3 2 1 7 7 C 1.38816 * 119.99698 * 180.27466 * 2 1 3 8 8 H 1.07997 * 120.00292 * 28.77711 * 7 2 1 9 9 N 1.36942 * 119.99484 * 208.77250 * 7 2 1 10 10 C 1.47016 * 125.65288 * 9.86482 * 9 7 2 11 11 C 1.54317 * 107.27340 * 181.02187 * 10 9 7 12 12 C 1.55159 * 102.94305 * 22.19881 * 11 10 9 13 13 H 1.08993 * 111.00540 * 82.56701 * 12 11 10 14 14 O 1.42898 * 111.00519 * 206.38942 * 12 11 10 15 15 C 1.35311 * 116.99698 * 210.00119 * 14 12 11 16 16 N 1.32905 * 120.03250 * 359.97438 * 15 14 12 17 17 C 1.32153 * 120.06398 * 179.97438 * 16 15 14 18 18 N 1.32187 * 120.13491 * 0.02562 * 17 16 15 19 19 C 1.32880 * 120.06201 * 359.97125 * 18 17 16 20 20 O 1.35310 * 120.02984 * 180.02562 * 19 18 17 21 21 N 1.32682 * 120.02929 * 179.72246 * 15 14 12 22 22 C 1.47425 * 125.64203 * 189.56318 * 9 7 2 23 23 H 0.96994 * 119.99751 * 184.81364 * 1 2 3 24 24 H 1.09000 * 109.88642 * 300.44385 * 10 9 7 25 25 H 1.09000 * 109.87745 * 61.45131 * 10 9 7 26 26 H 1.09003 * 110.71941 * 140.56100 * 11 10 9 27 27 H 1.09004 * 110.72058 * 263.65748 * 11 10 9 28 28 H 1.08002 * 119.93228 * 179.97438 * 17 16 15 29 29 H 0.96698 * 114.00271 * 90.00075 * 20 19 18 30 30 H 1.09000 * 110.36411 * 274.74361 * 22 9 7 31 31 H 1.08996 * 110.37033 * 37.07132 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6099 1.9817 1.3940 5 1 3.4873 1.4751 -0.8092 6 1 1.3961 2.6824 -0.5850 7 6 2.0102 -1.2022 -0.0058 8 1 1.5703 -2.0776 -0.4602 9 7 3.2528 -1.2781 0.5647 10 6 3.8821 -0.2364 1.3896 11 6 5.2817 -0.7504 1.7875 12 6 5.5853 -1.8116 0.6971 13 1 5.9701 -1.3424 -0.2083 14 8 6.4941 -2.8009 1.1840 15 6 7.3134 -3.3819 0.2772 16 7 7.2494 -3.0254 -1.0015 17 6 8.0496 -3.5920 -1.8876 18 7 8.9153 -4.5149 -1.5054 19 6 8.9838 -4.8752 -0.2282 20 8 9.8706 -5.8195 0.1624 21 7 8.1848 -4.3043 0.6647 22 6 4.1785 -2.4206 0.4586 23 1 -0.4849 -0.8370 0.0705 24 1 3.9752 0.6854 0.8153 25 1 3.2826 -0.0580 2.2822 26 1 6.0130 0.0572 1.7539 27 1 5.2581 -1.2064 2.7773 28 1 7.9955 -3.3010 -2.9263 29 1 10.7330 -5.4665 0.4206 30 1 3.9508 -3.1654 1.2212 31 1 4.1212 -2.8643 -0.5353 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229610709.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:38 Heat of formation + Delta-G solvation = 10.657873 kcal Electronic energy + Delta-G solvation = -18216.322085 eV Core-core repulsion = 15113.963409 eV Total energy + Delta-G solvation = -3102.358677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.05897 -40.75561 -38.99700 -38.26370 -35.06950 -34.51695 -33.89615 -31.50847 -29.84509 -26.50164 -26.35628 -25.29165 -22.74220 -22.34981 -20.92840 -20.23110 -19.51922 -19.25114 -17.70259 -17.30751 -16.99678 -16.30168 -15.86311 -15.60123 -15.46117 -15.21157 -14.76913 -14.58903 -14.23625 -13.58911 -13.39128 -13.13631 -13.09337 -12.49051 -12.33175 -12.04256 -11.93205 -11.63299 -11.22725 -11.08423 -10.95391 -10.80483 -10.62102 -9.22014 -8.72769 -5.47101 -0.50027 -0.32171 0.87902 1.42924 1.54880 1.74666 1.93137 2.43838 2.54879 2.62126 2.88059 2.99431 3.38684 3.44938 3.63152 3.93244 3.97463 4.17962 4.33034 4.54022 4.64672 4.76761 4.79770 4.92948 5.05969 5.12629 5.30046 5.50894 5.84410 6.05192 6.32382 6.75556 6.90649 7.38381 8.03644 8.78232 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045544 B = 0.004937 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.647657 B = 5670.088274 C = 5754.368013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.063 4.063 3 Si 1.097 2.903 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.304 1.304 7 C -0.332 4.332 8 H 0.044 0.956 9 N -0.623 5.623 10 C 0.111 3.889 11 C -0.111 4.111 12 C 0.087 3.913 13 H 0.117 0.883 14 O -0.276 6.276 15 C 0.558 3.442 16 N -0.617 5.617 17 C 0.408 3.592 18 N -0.589 5.589 19 C 0.579 3.421 20 O -0.450 6.450 21 N -0.597 5.597 22 C 0.123 3.877 23 H 0.251 0.749 24 H 0.036 0.964 25 H 0.040 0.960 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.262 0.738 29 H 0.444 0.556 30 H 0.028 0.972 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.832 -4.424 -0.662 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.259 4.259 3 Si 0.923 3.077 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.233 1.233 7 C -0.460 4.460 8 H 0.062 0.938 9 N -0.352 5.352 10 C -0.013 4.013 11 C -0.148 4.148 12 C 0.030 3.970 13 H 0.134 0.866 14 O -0.172 6.172 15 C 0.248 3.752 16 N -0.355 5.355 17 C 0.114 3.886 18 N -0.326 5.326 19 C 0.266 3.734 20 O -0.258 6.258 21 N -0.343 5.343 22 C -0.003 4.003 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.135 0.865 27 H 0.114 0.886 28 H 0.277 0.723 29 H 0.310 0.690 30 H 0.046 0.954 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 22.113 -3.250 -0.436 22.354 hybrid contribution -0.266 -1.904 0.019 1.922 sum 21.847 -5.154 -0.417 22.451 Atomic orbital electron populations 1.71004 1.07425 1.28659 1.51444 1.27080 0.96041 1.04276 0.98482 0.83433 0.73714 0.72431 0.78135 1.18924 1.19609 1.23273 1.19878 0.91445 0.97194 1.37466 0.93813 1.44666 1.15676 1.16361 1.58482 1.21846 0.92958 0.92226 0.94275 1.22743 0.95794 0.97585 0.98695 1.23904 0.86436 0.86870 0.99822 0.86558 1.86098 1.45834 1.52490 1.32825 1.20718 0.84814 0.84758 0.84893 1.68895 1.30143 1.34201 1.02261 1.26126 0.79684 0.81916 1.00896 1.68884 1.27194 1.18669 1.17821 1.20304 0.86898 0.82553 0.83624 1.84640 1.27284 1.27834 1.86010 1.67664 1.11284 1.13309 1.42056 1.21957 0.88481 0.90905 0.98949 0.94024 0.94698 0.94157 0.86525 0.88609 0.72254 0.68956 0.95391 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.70 21.65 0.30 -59.71 16 2 C -0.06 -3.74 5.41 84.86 0.46 -3.28 16 3 Si 1.10 51.66 24.74 68.60 1.70 53.36 16 4 H -0.26 -11.13 6.76 99.48 0.67 -10.45 16 5 H -0.27 -11.66 6.86 99.48 0.68 -10.97 16 6 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.33 -19.37 10.41 84.03 0.87 -18.50 16 8 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 9 N -0.62 -30.37 3.28 -691.56 -2.27 -32.64 16 10 C 0.11 4.49 5.00 86.73 0.43 4.93 16 11 C -0.11 -3.31 6.68 31.78 0.21 -3.10 16 12 C 0.09 2.82 3.37 32.07 0.11 2.93 16 13 H 0.12 3.65 6.95 -2.39 -0.02 3.63 16 14 O -0.28 -8.70 10.00 -85.98 -0.86 -9.56 16 15 C 0.56 16.31 8.55 180.28 1.54 17.85 16 16 N -0.62 -15.84 8.79 -317.61 -2.79 -18.64 16 17 C 0.41 7.64 12.40 180.66 2.24 9.88 16 18 N -0.59 -12.09 10.53 -317.62 -3.34 -15.44 16 19 C 0.58 13.00 8.83 180.28 1.59 14.59 16 20 O -0.45 -7.34 13.63 -85.97 -1.17 -8.51 16 21 N -0.60 -16.58 10.55 -430.96 -4.55 -21.12 16 22 C 0.12 5.08 6.98 86.93 0.61 5.68 16 23 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 24 H 0.04 1.43 3.71 -2.39 -0.01 1.42 16 25 H 0.04 1.70 8.01 -2.39 -0.02 1.68 16 26 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.26 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.44 1.82 9.06 -74.06 -0.67 1.15 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.69 268.73 -4.51 -80.21 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 0.41 Total: 1.07 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 8.07 Total: 30.99 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -12.66 Total: -147.55 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -2.03 Total: -18.07 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 1.70 Total: 53.36 kcal Total: -75.69 -4.51 -80.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229610709.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.865 kcal (2) G-P(sol) polarization free energy of solvation -75.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds