Wall clock time and date at job start Sun Mar 29 2020 23:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47068 * 239.99771 * 3 2 1 5 5 H 1.48492 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47226 * 120.00218 * 3 2 1 7 7 C 1.37878 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00636 * 359.97438 * 7 2 1 10 10 C 1.53114 * 109.52784 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.28178 * 177.62012 * 10 9 7 12 12 N 1.46845 * 109.52279 * 300.82608 * 11 10 9 13 13 C 1.46906 * 110.99877 * 185.83754 * 12 11 10 14 14 C 1.50699 * 109.47140 * 169.99756 * 13 12 11 15 15 C 1.37804 * 122.61704 * 269.70776 * 14 13 12 16 16 N 1.30088 * 116.87714 * 179.78533 * 15 14 13 17 17 S 1.69596 * 107.15360 * 0.44733 * 16 15 14 18 18 C 1.35134 * 122.61887 * 90.00239 * 14 13 12 19 19 C 1.46845 * 111.20118 * 61.73958 * 12 11 10 20 20 C 1.53037 * 109.52225 * 298.25692 * 19 12 11 21 21 H 0.96996 * 119.99556 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.52117 * 59.87318 * 9 7 2 23 23 H 1.08996 * 109.50286 * 57.68106 * 10 9 7 24 24 H 1.08997 * 109.53662 * 297.58634 * 10 9 7 25 25 H 1.08995 * 109.46542 * 180.80231 * 11 10 9 26 26 H 1.09005 * 109.44912 * 60.83149 * 11 10 9 27 27 H 1.09004 * 109.47040 * 289.99694 * 13 12 11 28 28 H 1.09000 * 109.47033 * 49.99646 * 13 12 11 29 29 H 1.08000 * 121.56439 * 0.02562 * 15 14 13 30 30 H 1.08008 * 127.24998 * 359.97438 * 18 14 13 31 31 H 1.08998 * 109.46500 * 58.27251 * 19 12 11 32 32 H 1.08995 * 109.46400 * 178.24044 * 19 12 11 33 33 H 1.09001 * 109.50550 * 299.23861 * 20 19 12 34 34 H 1.08996 * 109.50309 * 179.12374 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6640 -0.0018 11 6 1.4750 -4.9852 0.0582 12 7 0.6541 -5.0200 1.2752 13 6 0.0078 -6.3293 1.4370 14 6 -0.6202 -6.4140 2.8043 15 6 0.0563 -6.8962 3.9038 16 7 -0.5922 -6.9155 5.0313 17 16 -2.1469 -6.3113 4.7246 18 6 -1.8925 -6.0285 3.0466 19 6 -0.3396 -3.9389 1.2766 20 6 0.3761 -2.5864 1.2531 21 1 -0.4849 0.8400 -0.0004 22 1 0.6220 -2.5566 -0.8889 23 1 2.8996 -3.5846 0.8660 24 1 2.8426 -3.6321 -0.9127 25 1 2.1802 -5.8162 0.0718 26 1 0.8308 -5.0700 -0.8170 27 1 -0.7623 -6.4510 0.6752 28 1 0.7527 -7.1179 1.3298 29 1 1.0783 -7.2382 3.8336 30 1 -2.6006 -5.6274 2.3365 31 1 -0.9753 -4.0287 0.3958 32 1 -0.9523 -4.0100 2.1753 33 1 1.0014 -2.4901 2.1407 34 1 -0.3618 -1.7844 1.2384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232226921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:01 Heat of formation + Delta-G solvation = 35.167056 kcal Electronic energy + Delta-G solvation = -16461.861955 eV Core-core repulsion = 13906.859291 eV Total energy + Delta-G solvation = -2555.002664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40172 -37.72159 -34.09260 -32.07419 -30.50666 -29.79258 -27.15837 -25.07805 -23.45734 -22.09520 -21.38528 -19.64917 -18.60209 -17.63339 -16.39171 -15.60496 -15.43537 -14.48355 -14.36256 -13.78040 -13.70272 -13.29018 -12.98179 -12.72841 -12.36566 -12.08478 -11.90972 -11.45612 -11.04915 -10.93452 -10.73867 -10.57864 -10.35012 -10.23294 -9.97823 -9.63211 -9.42917 -8.97760 -8.71026 -8.58275 -8.28731 -7.79950 -5.96986 -4.02125 0.75332 1.57322 1.90716 2.49427 3.33326 3.37859 3.40768 4.45344 4.51764 4.76234 4.90462 5.23840 5.33439 5.44810 5.60364 5.68109 5.86217 5.88144 5.96520 6.09088 6.17980 6.29414 6.59009 6.61598 6.64414 6.84037 7.06587 7.14376 7.42012 7.58966 7.64905 7.82054 8.04731 8.15404 8.48688 9.01306 9.62269 11.09311 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.005174 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.116727 B = 5410.826593 C = 5859.225417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.107 4.107 11 C 0.062 3.938 12 N -0.531 5.531 13 C 0.117 3.883 14 C -0.149 4.149 15 C 0.110 3.890 16 N -0.465 5.465 17 S 0.235 5.765 18 C -0.196 4.196 19 C 0.055 3.945 20 C -0.103 4.103 21 H 0.260 0.740 22 H 0.020 0.980 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.184 0.816 30 H 0.181 0.819 31 H 0.022 0.978 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 -13.281 4.043 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.257 5.257 13 C -0.014 4.014 14 C -0.166 4.166 15 C -0.088 4.088 16 N -0.284 5.284 17 S 0.387 5.613 18 C -0.345 4.345 19 C -0.072 4.072 20 C -0.141 4.141 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.200 0.800 30 H 0.198 0.802 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.312 -13.246 6.517 15.380 hybrid contribution 0.712 0.995 -2.424 2.715 sum -3.600 -12.251 4.094 13.409 Atomic orbital electron populations 1.69863 1.05881 1.26408 1.51066 1.24962 0.94835 0.98997 0.95182 0.86697 0.79636 0.83305 0.78580 1.20363 1.21375 1.20305 1.21173 0.92851 0.90685 1.50190 0.92809 1.18680 0.92704 0.91770 0.93906 1.21680 0.98720 0.93682 1.00359 1.22126 0.95651 0.99462 0.89361 1.62012 1.23690 1.01447 1.38508 1.20623 0.97027 0.93443 0.90282 1.20137 0.93389 1.04285 0.98787 1.22739 1.01641 0.96998 0.87455 1.76813 1.02801 1.23005 1.25806 1.83955 1.17558 1.58009 1.01812 1.26483 1.00662 1.04620 1.02732 1.22337 0.93227 0.93037 0.98615 1.21651 1.00176 0.92927 0.99386 0.93062 0.96187 0.92452 0.93098 0.92262 0.95700 0.94189 0.90071 0.79975 0.80183 0.96016 0.92529 0.93918 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 11.38 55.43 0.63 -24.72 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.27 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 10 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 11 C 0.06 1.05 5.46 -3.84 -0.02 1.02 16 12 N -0.53 -8.95 4.65 -236.12 -1.10 -10.05 16 13 C 0.12 1.54 5.24 -4.97 -0.03 1.52 16 14 C -0.15 -1.92 4.81 -105.89 -0.51 -2.43 16 15 C 0.11 1.42 11.06 -18.45 -0.20 1.21 16 16 N -0.46 -6.54 12.09 28.86 0.35 -6.19 16 17 S 0.23 2.87 23.72 -107.50 -2.55 0.32 16 18 C -0.20 -2.39 9.44 29.63 0.28 -2.11 16 19 C 0.06 1.05 5.21 -3.83 -0.02 1.03 16 20 C -0.10 -2.42 5.12 -26.65 -0.14 -2.55 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 29 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.18 1.92 8.06 -52.48 -0.42 1.49 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.01 5.88 -51.93 -0.31 0.71 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -28.98 287.57 -9.52 -38.50 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.80 Total: -2.12 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.37 Total: -16.34 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.12 Total: -40.97 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.55 Total: 0.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.98 -9.52 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232226921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.667 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds