Wall clock time and date at job start Sun Mar 29 2020 23:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00122 * 2 1 4 4 H 1.48506 * 109.47068 * 239.99771 * 3 2 1 5 5 H 1.48492 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47226 * 120.00218 * 3 2 1 7 7 C 1.37878 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99795 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00636 * 359.97438 * 7 2 1 10 10 C 1.53114 * 109.52784 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.28178 * 177.62012 * 10 9 7 12 12 N 1.46845 * 109.52279 * 300.82608 * 11 10 9 13 13 C 1.46906 * 110.99877 * 185.83754 * 12 11 10 14 14 C 1.50699 * 109.47140 * 169.99756 * 13 12 11 15 15 C 1.37804 * 122.61704 * 269.70776 * 14 13 12 16 16 N 1.30088 * 116.87714 * 179.78533 * 15 14 13 17 17 S 1.69596 * 107.15360 * 0.44733 * 16 15 14 18 18 C 1.35134 * 122.61887 * 90.00239 * 14 13 12 19 19 C 1.46845 * 111.20118 * 61.73958 * 12 11 10 20 20 C 1.53037 * 109.52225 * 298.25692 * 19 12 11 21 21 H 0.96996 * 119.99556 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.52117 * 59.87318 * 9 7 2 23 23 H 1.08996 * 109.50286 * 57.68106 * 10 9 7 24 24 H 1.08997 * 109.53662 * 297.58634 * 10 9 7 25 25 H 1.08995 * 109.46542 * 180.80231 * 11 10 9 26 26 H 1.09005 * 109.44912 * 60.83149 * 11 10 9 27 27 H 1.09004 * 109.47040 * 289.99694 * 13 12 11 28 28 H 1.09000 * 109.47033 * 49.99646 * 13 12 11 29 29 H 1.08000 * 121.56439 * 0.02562 * 15 14 13 30 30 H 1.08008 * 127.24998 * 359.97438 * 18 14 13 31 31 H 1.08998 * 109.46500 * 58.27251 * 19 12 11 32 32 H 1.08995 * 109.46400 * 178.24044 * 19 12 11 33 33 H 1.09001 * 109.50550 * 299.23861 * 20 19 12 34 34 H 1.08996 * 109.50309 * 179.12374 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6640 -0.0018 11 6 1.4750 -4.9852 0.0582 12 7 0.6541 -5.0200 1.2752 13 6 0.0078 -6.3293 1.4370 14 6 -0.6202 -6.4140 2.8043 15 6 0.0563 -6.8962 3.9038 16 7 -0.5922 -6.9155 5.0313 17 16 -2.1469 -6.3113 4.7246 18 6 -1.8925 -6.0285 3.0466 19 6 -0.3396 -3.9389 1.2766 20 6 0.3761 -2.5864 1.2531 21 1 -0.4849 0.8400 -0.0004 22 1 0.6220 -2.5566 -0.8889 23 1 2.8996 -3.5846 0.8660 24 1 2.8426 -3.6321 -0.9127 25 1 2.1802 -5.8162 0.0718 26 1 0.8308 -5.0700 -0.8170 27 1 -0.7623 -6.4510 0.6752 28 1 0.7527 -7.1179 1.3298 29 1 1.0783 -7.2382 3.8336 30 1 -2.6006 -5.6274 2.3365 31 1 -0.9753 -4.0287 0.3958 32 1 -0.9523 -4.0100 2.1753 33 1 1.0014 -2.4901 2.1407 34 1 -0.3618 -1.7844 1.2384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232226921.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:00 Heat of formation + Delta-G solvation = 17.379270 kcal Electronic energy + Delta-G solvation = -16462.633292 eV Core-core repulsion = 13906.859291 eV Total energy + Delta-G solvation = -2555.774000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53025 -39.08972 -35.78545 -33.67635 -31.92883 -31.36972 -28.57697 -26.65750 -24.69078 -23.69836 -22.95951 -20.62271 -20.30307 -18.64840 -18.41184 -16.94280 -16.60999 -16.33482 -15.68924 -15.00899 -14.86257 -14.79489 -14.40526 -14.17230 -14.04904 -13.49135 -13.13500 -13.02788 -12.82206 -12.55551 -12.32763 -12.11248 -11.93638 -11.81479 -11.39095 -11.30970 -10.80956 -10.70077 -10.52353 -10.36056 -9.56565 -9.11770 -8.07210 -6.20031 -0.20942 0.62175 0.95154 1.41614 1.42694 1.50106 1.51638 2.44361 3.19185 3.23013 3.83209 3.93185 4.24729 4.26957 4.35861 4.42130 4.54958 4.59370 4.75060 4.81764 4.93468 4.95975 5.02525 5.02967 5.14351 5.26916 5.37373 5.59243 5.64064 5.68598 6.02736 6.05218 6.31277 6.36782 6.42824 6.91919 7.47634 8.97092 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.005174 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.116727 B = 5410.826593 C = 5859.225417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.043 3.957 10 C -0.101 4.101 11 C 0.068 3.932 12 N -0.539 5.539 13 C 0.121 3.879 14 C -0.161 4.161 15 C 0.111 3.889 16 N -0.496 5.496 17 S 0.244 5.756 18 C -0.195 4.195 19 C 0.070 3.930 20 C -0.094 4.094 21 H 0.259 0.741 22 H -0.010 1.010 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.026 0.974 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.204 0.796 30 H 0.195 0.805 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -14.547 4.026 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.060 4.060 12 N -0.264 5.264 13 C -0.009 4.009 14 C -0.178 4.178 15 C -0.088 4.088 16 N -0.315 5.315 17 S 0.397 5.603 18 C -0.344 4.344 19 C -0.058 4.058 20 C -0.133 4.133 21 H 0.069 0.931 22 H 0.008 0.992 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.220 0.780 30 H 0.212 0.788 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.822 -14.529 6.502 16.370 hybrid contribution 0.539 1.387 -2.411 2.834 sum -3.283 -13.142 4.091 14.150 Atomic orbital electron populations 1.70003 1.07099 1.27034 1.51627 1.25717 0.95665 1.02250 0.94939 0.85735 0.78492 0.79404 0.78764 1.19610 1.20996 1.19896 1.21590 0.92989 0.92405 1.50204 0.93185 1.18667 0.93233 0.92672 0.92947 1.21548 0.97959 0.94202 1.00172 1.22059 0.96032 0.98350 0.89521 1.61923 1.23449 1.02632 1.38441 1.20696 0.97966 0.91726 0.90498 1.20205 0.93657 1.05104 0.98864 1.23066 1.02435 0.96251 0.87003 1.76781 1.03787 1.24235 1.26732 1.83907 1.16888 1.57718 1.01805 1.26770 1.00907 1.03756 1.03000 1.22029 0.93171 0.91613 0.98976 1.21398 0.99066 0.94905 0.97904 0.93149 0.99236 0.93227 0.92735 0.88580 0.95618 0.93218 0.87275 0.78006 0.78786 0.96385 0.91421 0.95762 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 11.38 21.45 0.24 -53.09 16 2 C 0.01 0.71 5.31 84.65 0.45 1.15 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.53 -29.74 8.56 25.60 0.22 -29.52 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.04 2.17 2.16 -11.46 -0.02 2.14 16 10 C -0.10 -4.05 5.32 30.64 0.16 -3.89 16 11 C 0.07 2.12 5.46 86.33 0.47 2.60 16 12 N -0.54 -16.84 4.65 -900.93 -4.19 -21.03 16 13 C 0.12 2.76 5.24 85.56 0.45 3.20 16 14 C -0.16 -3.73 4.81 -20.68 -0.10 -3.83 16 15 C 0.11 2.58 11.06 84.85 0.94 3.52 16 16 N -0.50 -13.15 12.09 -62.60 -0.76 -13.90 16 17 S 0.24 5.62 23.72 -56.49 -1.34 4.28 16 18 C -0.20 -4.35 9.44 67.10 0.63 -3.72 16 19 C 0.07 2.60 5.21 86.33 0.45 3.05 16 20 C -0.09 -4.50 5.12 30.65 0.16 -4.35 16 21 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 22 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.10 2.36 8.01 -2.39 -0.02 2.35 16 26 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 1.08 8.11 -2.38 -0.02 1.06 16 28 H 0.11 1.92 7.97 -2.39 -0.02 1.91 16 29 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 30 H 0.19 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 2.34 5.88 -2.39 -0.01 2.33 16 33 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 3.15 6.18 -2.39 -0.01 3.13 16 Total: -1.00 -63.02 287.57 0.87 -62.15 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.08 Total: 5.18 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 3.81 Total: -29.64 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -4.70 Total: -88.02 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.34 Total: 4.28 kcal Total: -63.02 0.87 -62.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232226921.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.533 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds