Wall clock time and date at job start Sun Mar 29 2020 23:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76193 * 103.00337 * 2 1 4 4 N 1.32492 * 119.71110 * 0.24720 * 3 2 1 5 5 C 1.31929 * 121.61796 * 180.28208 * 4 3 2 6 6 C 1.38077 * 120.86041 * 359.75480 * 5 4 3 7 7 C 1.50700 * 120.33305 * 179.97438 * 6 5 4 8 8 C 1.38869 * 119.33556 * 359.97438 * 6 5 4 9 9 C 1.38317 * 118.51177 * 359.97438 * 8 6 5 10 10 C 1.50705 * 120.45116 * 180.02562 * 9 8 6 11 11 N 1.46498 * 109.46939 * 98.47969 * 10 9 8 12 12 C 1.46495 * 120.00141 * 275.82301 * 11 10 9 13 13 C 1.36943 * 119.99794 * 96.10317 * 11 10 9 14 14 H 1.07995 * 119.99849 * 220.46839 * 13 11 10 15 15 C 1.38814 * 120.00011 * 40.46607 * 13 11 10 16 16 N 1.31624 * 119.99797 * 14.61731 * 15 13 11 17 17 Si 1.86798 * 120.00136 * 194.61662 * 15 13 11 18 18 H 1.48499 * 109.47120 * 59.99993 * 17 15 13 19 19 H 1.48507 * 109.46763 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46845 * 299.99808 * 17 15 13 21 21 H 1.08993 * 109.47289 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46873 * 300.00275 * 1 2 3 23 23 H 1.08999 * 109.46824 * 59.99559 * 1 2 3 24 24 H 1.07999 * 119.57268 * 179.72751 * 5 4 3 25 25 H 1.09002 * 109.47103 * 270.01815 * 7 6 5 26 26 H 1.09001 * 109.46673 * 30.02583 * 7 6 5 27 27 H 1.09003 * 109.46677 * 150.02069 * 7 6 5 28 28 H 1.08002 * 120.74568 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47217 * 338.48125 * 10 9 8 30 30 H 1.08997 * 109.47120 * 218.48369 * 10 9 8 31 31 H 1.08991 * 109.47571 * 274.18328 * 12 11 10 32 32 H 1.08999 * 109.47008 * 34.19002 * 12 11 10 33 33 H 1.09000 * 109.46872 * 154.18817 * 12 11 10 34 34 H 0.97004 * 120.00418 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 7 1.2370 2.6155 0.0050 5 6 1.4909 3.9101 -0.0004 6 6 2.7903 4.3770 -0.0063 7 6 3.0667 5.8585 -0.0130 8 6 3.8399 3.4678 -0.0062 9 6 3.5432 2.1169 0.0006 10 6 4.6483 1.0922 0.0017 11 7 4.8720 0.6167 1.3692 12 6 5.7401 1.3732 2.2749 13 6 4.2743 -0.5380 1.7990 14 1 3.8631 -0.5943 2.7960 15 6 4.1968 -1.6359 0.9531 16 7 4.9337 -1.6804 -0.1366 17 14 3.0470 -3.0503 1.3614 18 1 1.6505 -2.5495 1.4280 19 1 3.1502 -4.0920 0.3081 20 1 3.4266 -3.6339 2.6731 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 0.6717 4.6139 -0.0005 25 1 3.1297 6.2117 -1.0423 26 1 2.2602 6.3807 0.5018 27 1 4.0100 6.0543 0.4968 28 1 4.8650 3.8079 -0.0103 29 1 5.5636 1.5445 -0.3801 30 1 4.3658 0.2525 -0.6333 31 1 6.7757 1.0685 2.1246 32 1 5.6410 2.4387 2.0675 33 1 5.4492 1.1753 3.3065 34 1 4.8794 -2.4474 -0.7279 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238717742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:31 Heat of formation + Delta-G solvation = 49.459521 kcal Electronic energy + Delta-G solvation = -16892.794019 eV Core-core repulsion = 14338.411123 eV Total energy + Delta-G solvation = -2554.382896 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53889 -35.71917 -33.13032 -32.02912 -30.87868 -28.28889 -26.97126 -26.21353 -25.58969 -22.70806 -21.84966 -20.07140 -17.33413 -16.61579 -16.13933 -14.82079 -14.56395 -14.16414 -13.77444 -13.47934 -13.33053 -13.14025 -12.99303 -12.76475 -12.41361 -12.29886 -12.08427 -11.73622 -11.44960 -11.08856 -10.92434 -10.73654 -10.45718 -10.09177 -9.98209 -9.28826 -9.12984 -8.88178 -8.72197 -8.37263 -6.59782 -6.50297 -5.78312 -3.35139 1.61855 1.88763 2.38004 3.17497 3.41804 3.45672 3.49995 4.25007 4.52930 5.10215 5.18927 5.31731 5.42725 5.50190 5.70411 5.72717 5.75112 5.75804 5.77213 6.01699 6.10317 6.30832 6.34975 6.44904 6.46403 6.68284 6.80508 6.86853 7.02566 7.23697 7.57987 7.83035 8.38582 8.53783 9.17379 9.76505 10.35849 11.23981 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.009910 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.026919 B = 2824.705464 C = 3670.757880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 S 0.017 5.983 3 C 0.118 3.882 4 N -0.499 5.499 5 C 0.087 3.913 6 C -0.160 4.160 7 C -0.099 4.099 8 C -0.072 4.072 9 C -0.106 4.106 10 C 0.177 3.823 11 N -0.580 5.580 12 C 0.124 3.876 13 C -0.241 4.241 14 H 0.059 0.941 15 C 0.033 3.967 16 N -0.891 5.891 17 Si 0.879 3.121 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.280 1.280 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.126 0.874 29 H 0.036 0.964 30 H 0.117 0.883 31 H 0.007 0.993 32 H 0.020 0.980 33 H 0.037 0.963 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 9.245 -1.129 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.345 4.345 2 S 0.261 5.739 3 C -0.131 4.131 4 N -0.212 5.212 5 C -0.073 4.073 6 C -0.166 4.166 7 C -0.157 4.157 8 C -0.101 4.101 9 C -0.118 4.118 10 C 0.050 3.950 11 N -0.301 5.301 12 C -0.021 4.021 13 C -0.373 4.373 14 H 0.077 0.923 15 C -0.169 4.169 16 N -0.533 5.533 17 Si 0.708 3.292 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.206 1.206 21 H 0.107 0.893 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.160 0.840 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.054 0.946 30 H 0.134 0.866 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.639 7.717 -1.240 9.089 hybrid contribution -0.644 0.810 0.199 1.054 sum -5.283 8.527 -1.041 10.085 Atomic orbital electron populations 1.23651 1.01263 1.04552 1.05008 1.87470 1.00184 0.96768 1.89514 1.23269 0.91700 0.99153 0.98943 1.67988 1.35377 1.02376 1.15451 1.22273 0.94873 0.91767 0.98376 1.20682 0.94576 0.96510 1.04826 1.20595 1.01928 0.91471 1.01706 1.21233 0.98583 0.92146 0.98093 1.21860 0.96514 0.96226 0.97157 1.20052 0.90943 0.94466 0.89567 1.43602 1.52251 1.24492 1.09725 1.21070 0.93289 0.93563 0.94173 1.18998 1.29984 0.88295 0.99975 0.92308 1.25099 0.97126 0.96730 0.97947 1.69850 1.38757 1.30291 1.14412 0.86667 0.82449 0.82225 0.77823 1.19217 1.21448 1.20630 0.89346 0.90554 0.90986 0.84000 0.91732 0.91970 0.91886 0.85652 0.94555 0.86575 0.97477 0.96107 0.94434 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 10.02 101.05 1.01 -2.16 16 2 S 0.02 0.39 15.94 -107.50 -1.71 -1.33 16 3 C 0.12 2.58 7.00 -16.93 -0.12 2.46 16 4 N -0.50 -10.01 9.43 -12.11 -0.11 -10.13 16 5 C 0.09 1.48 10.85 -17.57 -0.19 1.29 16 6 C -0.16 -2.55 5.90 -104.45 -0.62 -3.17 16 7 C -0.10 -1.14 10.03 36.01 0.36 -0.78 16 8 C -0.07 -1.30 9.50 -39.32 -0.37 -1.67 16 9 C -0.11 -2.28 5.49 -104.25 -0.57 -2.85 16 10 C 0.18 4.17 4.89 -5.19 -0.03 4.15 16 11 N -0.58 -14.45 2.80 -182.51 -0.51 -14.96 16 12 C 0.12 2.68 10.72 59.84 0.64 3.32 16 13 C -0.24 -6.43 8.00 -15.06 -0.12 -6.55 16 14 H 0.06 1.60 7.87 -52.49 -0.41 1.19 16 15 C 0.03 0.87 3.46 -17.43 -0.06 0.81 16 16 N -0.89 -24.67 11.35 55.49 0.63 -24.04 16 17 Si 0.88 21.03 28.07 -169.99 -4.77 16.26 16 18 H -0.27 -6.14 6.94 56.52 0.39 -5.75 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 22 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 23 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 24 H 0.14 1.94 8.06 -52.49 -0.42 1.51 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.04 0.82 8.01 -51.93 -0.42 0.40 16 30 H 0.12 3.04 4.61 -51.93 -0.24 2.80 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 292.53 15.07 4.41 4.41 Total: -1.00 -28.93 292.53 -6.98 -35.91 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.85 Total: -0.97 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.06 Total: -5.15 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.00 Total: -49.13 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.77 Total: 16.26 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.71 Total: -1.33 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.93 -6.98 -35.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238717742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.370 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds