Wall clock time and date at job start Sun Mar 29 2020 23:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76193 * 103.00337 * 2 1 4 4 N 1.32492 * 119.71110 * 0.24720 * 3 2 1 5 5 C 1.31929 * 121.61796 * 180.28208 * 4 3 2 6 6 C 1.38077 * 120.86041 * 359.75480 * 5 4 3 7 7 C 1.50700 * 120.33305 * 179.97438 * 6 5 4 8 8 C 1.38869 * 119.33556 * 359.97438 * 6 5 4 9 9 C 1.38317 * 118.51177 * 359.97438 * 8 6 5 10 10 C 1.50705 * 120.45116 * 180.02562 * 9 8 6 11 11 N 1.46498 * 109.46939 * 98.47969 * 10 9 8 12 12 C 1.46495 * 120.00141 * 275.82301 * 11 10 9 13 13 C 1.36943 * 119.99794 * 96.10317 * 11 10 9 14 14 H 1.07995 * 119.99849 * 220.46839 * 13 11 10 15 15 C 1.38814 * 120.00011 * 40.46607 * 13 11 10 16 16 N 1.31624 * 119.99797 * 14.61731 * 15 13 11 17 17 Si 1.86798 * 120.00136 * 194.61662 * 15 13 11 18 18 H 1.48499 * 109.47120 * 59.99993 * 17 15 13 19 19 H 1.48507 * 109.46763 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46845 * 299.99808 * 17 15 13 21 21 H 1.08993 * 109.47289 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46873 * 300.00275 * 1 2 3 23 23 H 1.08999 * 109.46824 * 59.99559 * 1 2 3 24 24 H 1.07999 * 119.57268 * 179.72751 * 5 4 3 25 25 H 1.09002 * 109.47103 * 270.01815 * 7 6 5 26 26 H 1.09001 * 109.46673 * 30.02583 * 7 6 5 27 27 H 1.09003 * 109.46677 * 150.02069 * 7 6 5 28 28 H 1.08002 * 120.74568 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47217 * 338.48125 * 10 9 8 30 30 H 1.08997 * 109.47120 * 218.48369 * 10 9 8 31 31 H 1.08991 * 109.47571 * 274.18328 * 12 11 10 32 32 H 1.08999 * 109.47008 * 34.19002 * 12 11 10 33 33 H 1.09000 * 109.46872 * 154.18817 * 12 11 10 34 34 H 0.97004 * 120.00418 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7167 0.0000 4 7 1.2370 2.6155 0.0050 5 6 1.4909 3.9101 -0.0004 6 6 2.7903 4.3770 -0.0063 7 6 3.0667 5.8585 -0.0130 8 6 3.8399 3.4678 -0.0062 9 6 3.5432 2.1169 0.0006 10 6 4.6483 1.0922 0.0017 11 7 4.8720 0.6167 1.3692 12 6 5.7401 1.3732 2.2749 13 6 4.2743 -0.5380 1.7990 14 1 3.8631 -0.5943 2.7960 15 6 4.1968 -1.6359 0.9531 16 7 4.9337 -1.6804 -0.1366 17 14 3.0470 -3.0503 1.3614 18 1 1.6505 -2.5495 1.4280 19 1 3.1502 -4.0920 0.3081 20 1 3.4266 -3.6339 2.6731 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 0.6717 4.6139 -0.0005 25 1 3.1297 6.2117 -1.0423 26 1 2.2602 6.3807 0.5018 27 1 4.0100 6.0543 0.4968 28 1 4.8650 3.8079 -0.0103 29 1 5.5636 1.5445 -0.3801 30 1 4.3658 0.2525 -0.6333 31 1 6.7757 1.0685 2.1246 32 1 5.6410 2.4387 2.0675 33 1 5.4492 1.1753 3.3065 34 1 4.8794 -2.4474 -0.7279 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238717742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:30 Heat of formation + Delta-G solvation = 32.687271 kcal Electronic energy + Delta-G solvation = -16893.521318 eV Core-core repulsion = 14338.411123 eV Total energy + Delta-G solvation = -2555.110196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98727 -37.52766 -34.41965 -33.77692 -32.66710 -29.72857 -28.22100 -27.82673 -27.49018 -24.17095 -23.52145 -21.68309 -18.90540 -18.45525 -17.62918 -16.71624 -16.06509 -15.72321 -15.39419 -15.33176 -14.86479 -14.57633 -14.32223 -14.25452 -13.74745 -13.49983 -13.40659 -13.21883 -13.10969 -12.79751 -12.62117 -12.50068 -12.28947 -11.99362 -11.84758 -10.88943 -10.51961 -10.38500 -10.37253 -10.17982 -8.49776 -8.17365 -7.77514 -5.38210 0.18966 0.44026 0.80812 1.50652 1.53084 1.56708 1.68624 2.56719 2.82708 3.39082 3.77056 3.90753 3.98528 4.16832 4.19708 4.33337 4.35378 4.38605 4.68994 4.76851 4.81219 4.87916 4.91740 4.98130 5.05221 5.13257 5.21486 5.39640 5.44721 5.69608 5.75114 5.88613 6.54064 6.93781 7.21826 7.84849 8.39900 9.21723 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.009910 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.026919 B = 2824.705464 C = 3670.757880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.057 6.057 3 C 0.100 3.900 4 N -0.511 5.511 5 C 0.084 3.916 6 C -0.144 4.144 7 C -0.097 4.097 8 C -0.074 4.074 9 C -0.128 4.128 10 C 0.184 3.816 11 N -0.597 5.597 12 C 0.126 3.874 13 C -0.249 4.249 14 H 0.046 0.954 15 C 0.006 3.994 16 N -0.915 5.915 17 Si 0.917 3.083 18 H -0.255 1.255 19 H -0.293 1.293 20 H -0.280 1.280 21 H 0.104 0.896 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.181 0.819 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.004 0.996 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 11.943 -0.987 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.185 5.815 3 C -0.147 4.147 4 N -0.224 5.224 5 C -0.077 4.077 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.102 4.102 9 C -0.139 4.139 10 C 0.057 3.943 11 N -0.319 5.319 12 C -0.019 4.019 13 C -0.380 4.380 14 H 0.063 0.937 15 C -0.193 4.193 16 N -0.559 5.559 17 Si 0.745 3.255 18 H -0.180 1.180 19 H -0.219 1.219 20 H -0.206 1.206 21 H 0.122 0.878 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.198 0.802 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.164 0.836 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.730 10.435 -1.082 11.954 hybrid contribution -0.369 0.204 0.130 0.441 sum -6.098 10.639 -0.951 12.300 Atomic orbital electron populations 1.23555 0.97358 1.05763 1.05466 1.87484 1.04276 0.99321 1.90461 1.23033 0.92169 0.98518 1.01009 1.67968 1.35104 1.03564 1.15730 1.23026 0.96775 0.91174 0.96714 1.21172 0.93422 0.98803 1.01553 1.20702 1.03411 0.87869 1.03403 1.21535 1.00446 0.91068 0.97177 1.21680 0.95628 0.97139 0.99468 1.19791 0.91684 0.94249 0.88569 1.43794 1.52966 1.24697 1.10405 1.21101 0.92548 0.94519 0.93691 1.18970 1.30226 0.89274 0.99577 0.93654 1.25442 0.97938 0.98155 0.97740 1.69963 1.40173 1.30559 1.15228 0.86065 0.81961 0.80195 0.77256 1.18048 1.21933 1.20575 0.87756 0.90448 0.90012 0.80199 0.89834 0.89764 0.90755 0.83639 0.94530 0.89410 0.97753 0.93818 0.94327 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.02 113.37 1.14 -4.22 16 2 S -0.06 -2.58 15.94 -56.49 -0.90 -3.48 16 3 C 0.10 4.34 7.00 84.81 0.59 4.94 16 4 N -0.51 -19.54 9.43 -192.22 -1.81 -21.35 16 5 C 0.08 2.54 10.85 84.64 0.92 3.46 16 6 C -0.14 -4.02 5.90 -19.75 -0.12 -4.14 16 7 C -0.10 -1.69 10.03 71.24 0.71 -0.98 16 8 C -0.07 -2.49 9.50 22.44 0.21 -2.28 16 9 C -0.13 -5.43 5.49 -19.62 -0.11 -5.53 16 10 C 0.18 8.82 4.89 85.64 0.42 9.24 16 11 N -0.60 -30.13 2.80 -731.33 -2.05 -32.18 16 12 C 0.13 5.40 10.72 127.77 1.37 6.77 16 13 C -0.25 -13.61 8.00 84.03 0.67 -12.94 16 14 H 0.05 2.55 7.87 -2.91 -0.02 2.52 16 15 C 0.01 0.34 3.46 84.86 0.29 0.64 16 16 N -0.92 -52.37 11.35 21.65 0.25 -52.13 16 17 Si 0.92 43.91 28.07 68.60 1.93 45.84 16 18 H -0.26 -11.63 6.94 99.48 0.69 -10.94 16 19 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 21 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 22 H 0.08 2.65 8.14 -2.39 -0.02 2.64 16 23 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 27 H 0.07 1.19 8.09 -2.39 -0.02 1.18 16 28 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 29 H 0.04 1.67 8.01 -2.39 -0.02 1.65 16 30 H 0.09 4.77 4.61 -2.39 -0.01 4.76 16 31 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.04 1.62 8.10 -2.39 -0.02 1.61 16 33 H 0.04 1.60 8.01 -2.39 -0.02 1.58 16 34 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -63.87 292.53 4.58 -59.30 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.06 Total: 9.04 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 6.11 Total: -5.04 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.61 Total: -105.65 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.93 Total: 45.84 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -0.90 Total: -3.48 kcal Total: -63.87 4.58 -59.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238717742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.986 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds