Wall clock time and date at job start Sun Mar 29 2020 23:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48501 * 109.46914 * 239.99651 * 3 2 1 5 5 H 1.48500 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47296 * 120.00156 * 3 2 1 7 7 C 1.40187 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.40425 * 119.99535 * 0.02562 * 7 2 1 10 10 N 1.34154 * 120.60913 * 359.97438 * 9 7 2 11 11 C 1.31448 * 119.88500 * 179.97438 * 10 9 7 12 12 C 1.39225 * 121.21924 * 0.27804 * 11 10 9 13 13 N 1.31699 * 121.27773 * 359.41017 * 12 11 10 14 14 C 1.33459 * 119.99551 * 0.58527 * 13 12 11 15 15 C 1.46288 * 120.58570 * 179.68534 * 14 13 12 16 16 C 1.35207 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.47029 * 120.00114 * 180.02562 * 16 15 14 18 18 C 1.39953 * 120.18071 * 359.72256 * 17 16 15 19 19 C 1.37855 * 119.81854 * 179.76776 * 18 17 16 20 20 C 1.38445 * 120.17651 * 0.51326 * 19 18 17 21 21 C 1.38437 * 120.36670 * 359.74081 * 20 19 18 22 22 C 1.37854 * 120.18222 * 359.97438 * 21 20 19 23 23 H 0.96999 * 119.99971 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.38693 * 179.97438 * 11 10 9 25 25 H 1.08004 * 119.36486 * 179.72385 * 12 11 10 26 26 H 1.07994 * 120.00371 * 180.02562 * 15 14 13 27 27 H 1.08003 * 119.99919 * 0.02562 * 16 15 14 28 28 H 1.08001 * 120.09594 * 0.02562 * 18 17 16 29 29 H 1.08001 * 119.91518 * 180.27171 * 19 18 17 30 30 H 1.08002 * 119.81296 * 179.76504 * 20 19 18 31 31 H 1.07998 * 119.91053 * 180.02562 * 21 20 19 32 32 H 1.07999 * 120.09078 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2760 2.7465 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0078 -1.2141 0.0005 8 1 3.0877 -1.2141 0.0001 9 6 1.3056 -2.4301 0.0005 10 7 -0.0359 -2.4442 0.0005 11 6 -0.6788 -3.5908 0.0000 12 6 0.0067 -4.8025 0.0053 13 7 1.3231 -4.8434 -0.0007 14 6 2.0259 -3.7089 -0.0001 15 6 3.4885 -3.7393 0.0002 16 6 4.1400 -4.9240 -0.0005 17 6 5.6100 -4.9546 0.0004 18 6 6.3386 -3.7597 -0.0038 19 6 7.7166 -3.7970 0.0020 20 6 8.3799 -5.0123 0.0012 21 6 7.6667 -6.1988 0.0000 22 6 6.2883 -6.1789 0.0001 23 1 -0.4850 0.8400 0.0004 24 1 -1.7588 -3.5928 0.0005 25 1 -0.5517 -5.7270 0.0092 26 1 4.0478 -2.8155 0.0011 27 1 3.5807 -5.8479 -0.0018 28 1 5.8227 -2.8108 -0.0073 29 1 8.2804 -2.8759 0.0032 30 1 9.4596 -5.0347 0.0019 31 1 8.1916 -7.1426 -0.0002 32 1 5.7334 -7.1054 -0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239591378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:02 Heat of formation + Delta-G solvation = 70.702153 kcal Electronic energy + Delta-G solvation = -16676.635776 eV Core-core repulsion = 13987.730078 eV Total energy + Delta-G solvation = -2688.905698 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.89890 -38.55105 -34.34662 -34.01460 -31.96144 -30.73961 -30.54658 -28.19023 -26.06915 -23.84027 -22.29786 -22.08870 -21.16019 -18.74724 -17.84942 -16.83388 -15.97474 -15.29097 -15.09507 -14.61336 -14.32409 -13.95462 -13.22702 -13.03877 -13.00354 -12.61326 -12.55400 -11.88115 -11.71397 -11.50900 -11.48340 -10.87362 -10.69618 -10.56321 -10.22253 -10.19169 -9.85666 -9.64990 -9.20471 -8.67224 -8.28327 -7.57415 -7.09069 -6.73299 -4.83469 1.17359 1.71212 2.23077 2.73084 2.88467 2.90497 3.05910 3.60855 3.65012 4.33554 4.48888 5.14691 5.19622 5.27226 5.40626 5.65694 5.66322 5.74592 5.82675 5.84931 6.00373 6.19208 6.30676 6.37532 6.45490 6.70049 6.70347 6.73985 6.78800 6.80469 7.08794 7.31285 7.46895 7.50792 7.58591 7.82086 8.16463 8.46056 9.13897 9.67835 9.84604 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.006239 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.492177 B = 4486.995287 C = 5972.644340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.059 3.941 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.382 4.382 8 H 0.096 0.904 9 C 0.217 3.783 10 N -0.459 5.459 11 C 0.097 3.903 12 C -0.120 4.120 13 N -0.405 5.405 14 C -0.057 4.057 15 C -0.013 4.013 16 C -0.181 4.181 17 C -0.016 4.016 18 C -0.133 4.133 19 C -0.114 4.114 20 C -0.147 4.147 21 C -0.118 4.118 22 C -0.128 4.128 23 H 0.283 0.717 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -2.266 0.004 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.170 4.170 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.410 4.410 8 H 0.114 0.886 9 C 0.093 3.907 10 N -0.175 5.175 11 C -0.075 4.075 12 C -0.283 4.283 13 N -0.117 5.117 14 C -0.202 4.202 15 C -0.032 4.032 16 C -0.202 4.202 17 C -0.016 4.016 18 C -0.151 4.151 19 C -0.133 4.133 20 C -0.165 4.165 21 C -0.136 4.136 22 C -0.146 4.146 23 H 0.095 0.905 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.331 -2.054 0.000 8.580 hybrid contribution 0.122 0.621 -0.001 0.633 sum 8.452 -1.432 -0.001 8.573 Atomic orbital electron populations 1.70050 1.07614 1.29307 1.24084 1.26321 0.95146 1.01939 0.93587 0.86200 0.80183 0.79167 0.80537 1.18290 1.19693 1.18284 1.19678 0.95159 0.89113 1.37084 0.88581 1.20431 0.88938 0.92012 0.89353 1.69551 1.07640 1.24770 1.15582 1.23485 1.00040 0.90334 0.93640 1.22452 0.90944 0.97614 1.17307 1.67799 1.07874 1.30320 1.05710 1.21332 0.92910 0.89581 1.16327 1.21684 0.91227 0.96937 0.93367 1.21830 0.90309 0.98886 1.09148 1.19233 0.93727 0.92685 0.95950 1.21449 0.93906 0.98155 1.01553 1.21009 0.94430 0.97590 1.00224 1.21059 0.99233 0.92724 1.03529 1.20977 0.94188 0.97763 1.00661 1.21290 0.94072 0.97334 1.01950 0.90511 0.85293 0.85591 0.86399 0.85986 0.85740 0.86559 0.86896 0.86710 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.94 11.50 55.56 0.64 -16.30 16 2 C 0.06 1.38 5.50 -17.31 -0.10 1.28 16 3 Si 0.92 16.79 29.56 -169.99 -5.03 11.77 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.38 -9.38 8.84 -38.03 -0.34 -9.72 16 8 H 0.10 2.14 6.11 -52.49 -0.32 1.81 16 9 C 0.22 5.71 6.71 -82.58 -0.55 5.16 16 10 N -0.46 -12.18 8.06 -9.49 -0.08 -12.26 16 11 C 0.10 2.28 11.17 -17.35 -0.19 2.08 16 12 C -0.12 -2.75 11.17 -17.24 -0.19 -2.94 16 13 N -0.40 -9.93 9.53 -8.05 -0.08 -10.00 16 14 C -0.06 -1.42 6.90 -80.48 -0.56 -1.98 16 15 C -0.01 -0.28 8.93 -37.43 -0.33 -0.62 16 16 C -0.18 -3.56 9.47 -37.10 -0.35 -3.91 16 17 C -0.02 -0.28 5.87 -105.05 -0.62 -0.89 16 18 C -0.13 -2.12 9.42 -39.08 -0.37 -2.49 16 19 C -0.11 -1.58 10.03 -39.65 -0.40 -1.98 16 20 C -0.15 -1.91 10.04 -39.43 -0.40 -2.30 16 21 C -0.12 -1.57 10.03 -39.65 -0.40 -1.97 16 22 C -0.13 -1.96 9.80 -39.08 -0.38 -2.34 16 23 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 24 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 25 H 0.13 2.47 8.06 -52.48 -0.42 2.04 16 26 H 0.12 2.34 4.43 -52.49 -0.23 2.11 16 27 H 0.12 2.50 7.44 -52.48 -0.39 2.11 16 28 H 0.12 1.93 6.17 -52.49 -0.32 1.60 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 284.64 15.07 4.29 4.29 Total: -1.00 -28.41 284.64 -8.36 -36.77 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -2.94 Total: 8.35 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -5.17 Total: -22.61 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.49 Total: -38.56 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.41 -8.36 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239591378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.473 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds