Wall clock time and date at job start Sun Mar 29 2020 23:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48501 * 109.46914 * 239.99651 * 3 2 1 5 5 H 1.48500 * 109.47270 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47296 * 120.00156 * 3 2 1 7 7 C 1.40187 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99975 * 179.97438 * 7 2 1 9 9 C 1.40425 * 119.99535 * 0.02562 * 7 2 1 10 10 N 1.34154 * 120.60913 * 359.97438 * 9 7 2 11 11 C 1.31448 * 119.88500 * 179.97438 * 10 9 7 12 12 C 1.39225 * 121.21924 * 0.27804 * 11 10 9 13 13 N 1.31699 * 121.27773 * 359.41017 * 12 11 10 14 14 C 1.33459 * 119.99551 * 0.58527 * 13 12 11 15 15 C 1.46288 * 120.58570 * 179.68534 * 14 13 12 16 16 C 1.35207 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.47029 * 120.00114 * 180.02562 * 16 15 14 18 18 C 1.39953 * 120.18071 * 359.72256 * 17 16 15 19 19 C 1.37855 * 119.81854 * 179.76776 * 18 17 16 20 20 C 1.38445 * 120.17651 * 0.51326 * 19 18 17 21 21 C 1.38437 * 120.36670 * 359.74081 * 20 19 18 22 22 C 1.37854 * 120.18222 * 359.97438 * 21 20 19 23 23 H 0.96999 * 119.99971 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.38693 * 179.97438 * 11 10 9 25 25 H 1.08004 * 119.36486 * 179.72385 * 12 11 10 26 26 H 1.07994 * 120.00371 * 180.02562 * 15 14 13 27 27 H 1.08003 * 119.99919 * 0.02562 * 16 15 14 28 28 H 1.08001 * 120.09594 * 0.02562 * 18 17 16 29 29 H 1.08001 * 119.91518 * 180.27171 * 19 18 17 30 30 H 1.08002 * 119.81296 * 179.76504 * 20 19 18 31 31 H 1.07998 * 119.91053 * 180.02562 * 21 20 19 32 32 H 1.07999 * 120.09078 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2760 2.7465 -0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0078 -1.2141 0.0005 8 1 3.0877 -1.2141 0.0001 9 6 1.3056 -2.4301 0.0005 10 7 -0.0359 -2.4442 0.0005 11 6 -0.6788 -3.5908 0.0000 12 6 0.0067 -4.8025 0.0053 13 7 1.3231 -4.8434 -0.0007 14 6 2.0259 -3.7089 -0.0001 15 6 3.4885 -3.7393 0.0002 16 6 4.1400 -4.9240 -0.0005 17 6 5.6100 -4.9546 0.0004 18 6 6.3386 -3.7597 -0.0038 19 6 7.7166 -3.7970 0.0020 20 6 8.3799 -5.0123 0.0012 21 6 7.6667 -6.1988 0.0000 22 6 6.2883 -6.1789 0.0001 23 1 -0.4850 0.8400 0.0004 24 1 -1.7588 -3.5928 0.0005 25 1 -0.5517 -5.7270 0.0092 26 1 4.0478 -2.8155 0.0011 27 1 3.5807 -5.8479 -0.0018 28 1 5.8227 -2.8108 -0.0073 29 1 8.2804 -2.8759 0.0032 30 1 9.4596 -5.0347 0.0019 31 1 8.1916 -7.1426 -0.0002 32 1 5.7334 -7.1054 -0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239591378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:02 Heat of formation + Delta-G solvation = 55.764724 kcal Electronic energy + Delta-G solvation = -16677.283512 eV Core-core repulsion = 13987.730078 eV Total energy + Delta-G solvation = -2689.553434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 252.096 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59159 -39.84071 -36.10309 -35.57392 -33.69642 -32.26575 -31.75638 -29.71523 -27.83739 -25.40660 -23.84788 -23.52253 -22.57243 -20.26811 -19.64570 -18.27503 -17.44670 -16.85029 -16.75957 -15.96478 -15.78518 -15.30169 -14.88675 -14.63119 -14.19625 -14.09841 -13.75802 -13.49170 -13.40229 -13.03733 -13.00908 -12.23702 -12.03318 -11.93909 -11.92063 -11.68705 -11.46761 -11.44174 -10.86982 -9.88215 -9.78879 -9.37879 -8.67274 -8.48980 -6.65482 -0.25462 0.59026 0.63567 1.06696 1.38002 1.52314 1.54882 2.01617 2.13108 2.71420 3.11900 3.80465 3.81457 3.94079 4.08548 4.12627 4.20313 4.33549 4.38300 4.55220 4.64840 4.67836 4.75214 4.95537 5.00943 5.13436 5.18740 5.29842 5.49868 5.62760 5.68165 5.77424 5.88332 5.99788 6.07110 6.20660 6.38687 6.64214 7.30817 7.85311 8.15897 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.006239 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.492177 B = 4486.995287 C = 5972.644340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.017 3.983 3 Si 0.995 3.005 4 H -0.252 1.252 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.406 4.406 8 H 0.109 0.891 9 C 0.181 3.819 10 N -0.495 5.495 11 C 0.083 3.917 12 C -0.129 4.129 13 N -0.425 5.425 14 C -0.068 4.068 15 C -0.052 4.052 16 C -0.145 4.145 17 C -0.055 4.055 18 C -0.141 4.141 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.119 4.119 22 C -0.131 4.131 23 H 0.291 0.709 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.720 -2.296 0.007 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.208 4.208 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.435 4.435 8 H 0.127 0.873 9 C 0.057 3.943 10 N -0.211 5.211 11 C -0.088 4.088 12 C -0.291 4.291 13 N -0.138 5.138 14 C -0.213 4.213 15 C -0.071 4.071 16 C -0.167 4.167 17 C -0.055 4.055 18 C -0.159 4.159 19 C -0.138 4.138 20 C -0.150 4.150 21 C -0.137 4.137 22 C -0.149 4.149 23 H 0.102 0.898 24 H 0.176 0.824 25 H 0.175 0.825 26 H 0.145 0.855 27 H 0.128 0.872 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.434 -2.128 0.002 11.630 hybrid contribution -0.627 0.411 -0.002 0.750 sum 10.807 -1.716 0.000 10.942 Atomic orbital electron populations 1.70129 1.09362 1.30733 1.24852 1.27310 0.95886 1.05232 0.92399 0.85051 0.78747 0.74139 0.80782 1.17572 1.18796 1.17559 1.20088 0.95990 0.89625 1.37831 0.87342 1.20927 0.89434 0.93349 0.90591 1.69510 1.08169 1.26254 1.17207 1.23960 1.01464 0.90011 0.93344 1.22945 0.90827 0.98773 1.16523 1.67856 1.08671 1.30337 1.06912 1.21796 0.94487 0.89378 1.15620 1.21642 0.89886 0.98098 0.97430 1.21944 0.92055 0.97615 1.05044 1.19225 0.92278 0.94410 0.99635 1.21593 0.95232 0.97579 1.01504 1.21363 0.93502 0.99460 0.99458 1.21573 1.01162 0.91980 1.00292 1.21381 0.93306 0.99619 0.99410 1.21521 0.95406 0.96808 1.01197 0.89780 0.82445 0.82509 0.85460 0.87201 0.86126 0.83873 0.83286 0.83443 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.86 11.50 21.87 0.25 -36.61 16 2 C 0.02 0.81 5.50 85.34 0.47 1.28 16 3 Si 0.99 34.34 29.56 68.60 2.03 36.37 16 4 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 6 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 7 C -0.41 -20.70 8.84 23.28 0.21 -20.50 16 8 H 0.11 4.98 6.11 -2.91 -0.02 4.97 16 9 C 0.18 10.00 6.71 41.55 0.28 10.28 16 10 N -0.49 -27.36 8.06 -183.93 -1.48 -28.85 16 11 C 0.08 3.99 11.17 84.99 0.95 4.94 16 12 C -0.13 -6.04 11.17 84.95 0.95 -5.09 16 13 N -0.43 -21.55 9.53 -179.37 -1.71 -23.26 16 14 C -0.07 -3.51 6.90 43.22 0.30 -3.21 16 15 C -0.05 -2.31 8.93 23.67 0.21 -2.10 16 16 C -0.15 -5.84 9.47 23.88 0.23 -5.62 16 17 C -0.06 -1.88 5.87 -20.14 -0.12 -2.00 16 18 C -0.14 -4.33 9.42 22.59 0.21 -4.11 16 19 C -0.12 -2.91 10.03 22.23 0.22 -2.68 16 20 C -0.13 -2.80 10.04 22.37 0.22 -2.58 16 21 C -0.12 -2.70 10.03 22.23 0.22 -2.47 16 22 C -0.13 -3.73 9.80 22.60 0.22 -3.51 16 23 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 24 H 0.16 6.37 8.06 -2.91 -0.02 6.34 16 25 H 0.16 6.11 8.06 -2.91 -0.02 6.08 16 26 H 0.13 5.26 4.43 -2.91 -0.01 5.25 16 27 H 0.11 4.61 7.44 -2.91 -0.02 4.59 16 28 H 0.12 3.70 6.17 -2.91 -0.02 3.68 16 29 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -64.14 284.64 4.80 -59.33 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 1.14 Total: 30.38 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 4.57 Total: -37.36 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.94 Total: -88.72 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Total: -64.14 4.80 -59.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239591378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.098 kcal (2) G-P(sol) polarization free energy of solvation -64.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds