Wall clock time and date at job start Sun Mar 29 2020 23:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81399 * 109.47133 * 2 1 4 4 C 1.81402 * 102.99955 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46981 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46910 * 180.02562 * 5 4 3 7 7 C 1.38127 * 120.03458 * 265.00104 * 6 5 4 8 8 C 1.38281 * 120.07020 * 179.97438 * 7 6 5 9 9 C 1.38325 * 120.13446 * 0.04441 * 8 7 6 10 10 C 1.38078 * 120.07219 * 359.97438 * 9 8 7 11 11 C 1.38856 * 120.03366 * 84.72606 * 6 5 4 12 12 O 1.35750 * 120.06931 * 359.97438 * 11 6 5 13 13 C 1.34834 * 116.99697 * 174.12666 * 12 11 6 14 14 H 1.07997 * 120.00310 * 5.07261 * 13 12 11 15 15 C 1.38656 * 119.99678 * 185.06421 * 13 12 11 16 16 N 1.31557 * 120.00133 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00132 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47136 * 89.99474 * 17 15 13 19 19 H 1.48493 * 109.47037 * 209.99678 * 17 15 13 20 20 H 1.48499 * 109.46776 * 329.99999 * 17 15 13 21 21 H 1.08997 * 109.47271 * 299.99947 * 1 2 3 22 22 H 1.08998 * 109.47217 * 59.99303 * 1 2 3 23 23 H 1.08993 * 109.47548 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47016 * 240.00552 * 2 1 3 25 25 H 1.08998 * 109.47217 * 120.00697 * 2 1 3 26 26 H 1.08997 * 109.47118 * 60.00367 * 4 3 2 27 27 H 1.08995 * 109.47315 * 299.99838 * 4 3 2 28 28 H 1.09007 * 109.46987 * 60.00174 * 5 4 3 29 29 H 1.08991 * 109.47102 * 300.00446 * 5 4 3 30 30 H 1.08000 * 119.96676 * 359.97438 * 7 6 5 31 31 H 1.07991 * 119.93130 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.96531 * 179.97438 * 9 8 7 33 33 H 1.08001 * 120.03333 * 179.97438 * 10 9 8 34 34 H 0.96995 * 119.99912 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.6064 2.8817 -0.0002 6 6 6.1038 2.7118 -0.0015 7 6 6.8034 2.7365 1.1892 8 6 8.1774 2.5801 1.1889 9 6 8.8555 2.3995 -0.0031 10 6 8.1619 2.3743 -1.1967 11 6 6.7810 2.5246 -1.1992 12 8 6.0955 2.4938 -2.3705 13 6 6.8230 2.4311 -3.5040 14 1 7.8965 2.3250 -3.4515 15 6 6.1929 2.5026 -4.7370 16 7 6.9027 2.4420 -5.8430 17 14 4.3361 2.6866 -4.8278 18 1 3.9816 4.1285 -4.8412 19 1 3.8350 2.0421 -6.0682 20 1 3.7159 2.0354 -3.6461 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 4.2398 0.9545 -0.8910 27 1 4.2406 0.9542 0.8889 28 1 4.3036 3.4326 0.8903 29 1 4.3029 3.4337 -0.8897 30 1 6.2768 2.8780 2.1215 31 1 8.7221 2.5994 2.1212 32 1 9.9287 2.2781 -0.0002 33 1 8.6920 2.2337 -2.1271 34 1 6.4618 2.4916 -6.7056 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250022392.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:33 Heat of formation + Delta-G solvation = -35.653159 kcal Electronic energy + Delta-G solvation = -16039.044272 eV Core-core repulsion = 13448.677862 eV Total energy + Delta-G solvation = -2590.366410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01866 -38.31414 -35.14636 -34.41192 -33.68286 -30.94479 -30.20280 -27.26929 -25.47625 -23.98786 -23.12341 -21.90852 -19.76521 -18.89350 -17.26229 -16.83437 -16.70879 -16.11825 -15.84360 -15.63269 -15.38614 -15.21740 -14.96231 -14.30354 -14.15092 -14.04661 -13.75044 -13.26410 -12.92481 -12.67028 -12.58301 -12.49208 -12.32568 -12.20014 -11.96783 -11.77627 -11.22339 -10.94652 -10.92902 -9.65960 -9.03836 -8.71324 -8.51776 -6.22817 0.44195 0.68571 0.77451 1.28707 1.32023 1.50386 1.62769 2.25289 2.76593 3.05005 3.15656 3.88285 3.99316 4.01108 4.04014 4.13014 4.18551 4.33404 4.49121 4.52520 4.57022 4.67723 4.83757 4.87978 4.89594 4.95082 5.08054 5.19897 5.30695 5.45425 5.63195 5.75379 5.80897 5.91064 6.27653 6.83789 7.59463 8.59880 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.009006 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.073754 B = 3108.351989 C = 4912.715444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 S -0.310 6.310 4 C -0.060 4.060 5 C -0.041 4.041 6 C -0.156 4.156 7 C -0.067 4.067 8 C -0.181 4.181 9 C -0.080 4.080 10 C -0.243 4.243 11 C 0.124 3.876 12 O -0.236 6.236 13 C -0.395 4.395 14 H 0.081 0.919 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.269 1.269 20 H -0.258 1.258 21 H 0.068 0.932 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.106 0.894 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -3.417 15.534 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.230 4.230 3 S -0.084 6.084 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.085 4.085 8 C -0.199 4.199 9 C -0.098 4.098 10 C -0.262 4.262 11 C 0.074 3.926 12 O -0.143 6.143 13 C -0.472 4.472 14 H 0.098 0.902 15 C -0.183 4.183 16 N -0.564 5.564 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.194 1.194 20 H -0.182 1.182 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.111 0.889 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.174 0.826 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.503 -2.504 15.258 17.646 hybrid contribution 0.752 -1.022 -1.126 1.696 sum -7.751 -3.525 14.132 16.499 Atomic orbital electron populations 1.21519 0.90747 1.03751 1.02928 1.23392 1.01236 0.93019 1.05377 1.86823 1.07028 1.16357 1.98166 1.23254 0.91732 1.01320 1.04516 1.19938 0.90028 0.94932 1.03021 1.19189 0.95406 1.10448 0.90877 1.21097 0.94382 0.96747 0.96300 1.21221 0.94394 1.06077 0.98213 1.21178 1.00300 0.96762 0.91556 1.21334 0.94115 1.11016 0.99722 1.19507 0.91352 0.95245 0.86454 1.83542 1.35449 1.83267 1.12060 1.20691 0.92572 1.51566 0.82333 0.90198 1.25156 1.04173 0.95778 0.93221 1.69721 1.38145 1.50341 0.98171 0.85385 0.78787 0.79285 0.78458 1.19413 1.19394 1.18228 0.91286 0.92593 0.88863 0.90750 0.88535 0.92634 0.88268 0.88284 0.93185 0.82564 0.82949 0.84458 0.87647 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.92 71.98 0.71 -1.60 16 2 C -0.08 -1.84 6.66 71.98 0.48 -1.36 16 3 S -0.31 -9.22 21.74 -56.49 -1.23 -10.45 16 4 C -0.06 -1.92 5.92 71.98 0.43 -1.50 16 5 C -0.04 -1.39 5.07 29.85 0.15 -1.24 16 6 C -0.16 -5.77 5.15 -19.74 -0.10 -5.87 16 7 C -0.07 -1.95 9.68 22.25 0.22 -1.73 16 8 C -0.18 -5.05 10.04 22.30 0.22 -4.83 16 9 C -0.08 -2.68 10.04 22.25 0.22 -2.46 16 10 C -0.24 -10.60 9.17 22.39 0.21 -10.40 16 11 C 0.12 5.71 6.62 22.58 0.15 5.85 16 12 O -0.24 -12.67 7.73 -22.78 -0.18 -12.85 16 13 C -0.40 -23.34 9.95 67.92 0.68 -22.66 16 14 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 15 C 0.02 0.89 5.49 84.83 0.47 1.36 16 16 N -0.92 -55.70 13.96 21.61 0.30 -55.40 16 17 Si 0.96 46.54 28.62 68.60 1.96 48.50 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.10 2.75 8.05 -2.38 -0.02 2.74 16 29 H 0.05 2.00 7.70 -2.39 -0.02 1.98 16 30 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 32 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 34 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -66.43 303.39 5.76 -60.67 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.07 Total: 15.96 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 3.83 Total: -46.43 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.30 Total: -55.40 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.18 Total: -12.85 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.96 Total: 48.50 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.23 Total: -10.45 kcal Total: -66.43 5.76 -60.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250022392.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.016 kcal (2) G-P(sol) polarization free energy of solvation -66.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds