Wall clock time and date at job start Sun Mar 29 2020 23:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34727 * 116.99899 * 2 1 4 4 O 1.21484 * 120.00433 * 0.02562 * 3 2 1 5 5 C 1.47572 * 119.99435 * 179.97438 * 3 2 1 6 6 C 1.39915 * 120.17407 * 270.00109 * 5 3 2 7 7 F 1.35096 * 120.11086 * 359.74911 * 6 5 3 8 8 C 1.38268 * 119.77504 * 179.72978 * 6 5 3 9 9 C 1.38252 * 120.12400 * 359.97438 * 8 6 5 10 10 C 1.38438 * 120.34533 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.22800 * 0.04210 * 10 9 8 12 12 C 1.50706 * 120.06325 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46889 * 265.00314 * 12 11 10 14 14 C 1.50706 * 109.46918 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99727 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00102 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99801 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99812 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47357 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46960 * 120.00194 * 18 16 14 21 21 H 1.48504 * 109.47226 * 239.99574 * 18 16 14 22 22 H 1.08993 * 109.47564 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47015 * 299.99994 * 1 2 3 24 24 H 1.09004 * 109.46859 * 59.99567 * 1 2 3 25 25 H 1.07996 * 119.94118 * 179.97438 * 8 6 5 26 26 H 1.07992 * 119.82933 * 180.02562 * 9 8 6 27 27 H 1.07998 * 119.88181 * 180.02562 * 10 9 8 28 28 H 1.08994 * 109.46983 * 25.00318 * 12 11 10 29 29 H 1.09002 * 109.46968 * 145.00704 * 12 11 10 30 30 H 1.09002 * 109.47195 * 299.99534 * 13 12 11 31 31 H 1.08995 * 109.47184 * 60.00120 * 13 12 11 32 32 H 0.96998 * 119.99989 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 0.0005 5 6 3.5374 1.2776 0.0006 6 6 4.2392 1.3145 1.2104 7 9 3.5697 1.2849 2.3835 8 6 5.6202 1.3811 1.2013 9 6 6.3056 1.4106 0.0010 10 6 5.6164 1.3731 -1.1990 11 6 4.2393 1.3070 -1.2067 12 6 3.4927 1.2670 -2.5153 13 6 3.0622 2.6839 -2.9002 14 6 2.3150 2.6438 -4.2084 15 1 2.1629 1.7020 -4.7148 16 6 1.8266 3.8095 -4.7594 17 7 2.0124 4.9564 -4.1430 18 14 0.9012 3.7599 -6.3812 19 1 0.8276 2.3584 -6.8665 20 1 -0.4728 4.2876 -6.1835 21 1 1.6124 4.5944 -7.3828 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 6.1646 1.4102 2.1336 26 1 7.3843 1.4622 -0.0005 27 1 6.1593 1.3961 -2.1323 28 1 4.1413 0.8609 -3.2913 29 1 2.6107 0.6350 -2.4112 30 1 2.4135 3.0900 -2.1241 31 1 3.9440 3.3159 -3.0043 32 1 1.6691 5.7765 -4.5308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:56 Heat of formation + Delta-G solvation = -118.003115 kcal Electronic energy + Delta-G solvation = -18344.764470 eV Core-core repulsion = 15184.613922 eV Total energy + Delta-G solvation = -3160.150548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.90640 -40.28640 -38.64780 -36.05522 -34.18413 -32.25856 -31.00584 -29.15162 -27.53074 -25.35990 -23.83391 -22.25833 -21.07178 -20.17684 -17.87608 -17.04105 -16.75007 -16.69727 -16.18590 -15.51329 -15.49583 -14.93005 -14.48490 -13.85411 -13.48448 -13.20899 -12.76493 -12.64991 -12.49727 -12.17139 -11.97488 -11.74123 -11.45933 -10.99232 -10.95850 -10.58914 -10.53957 -10.23386 -9.94010 -9.72496 -9.13048 -8.80593 -8.44445 -8.35280 -5.99426 -4.03310 1.03046 1.30475 2.41803 2.91442 3.30752 3.38040 3.41567 3.62752 4.18460 4.45154 4.77751 4.87504 5.08091 5.28768 5.30478 5.33207 5.36163 5.41620 5.68530 5.80942 5.94264 6.03436 6.13955 6.36776 6.44729 6.52227 6.70832 6.79141 6.96805 7.64258 7.77076 7.96138 8.01490 8.36766 9.03000 9.60448 11.11608 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.006870 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.594514 B = 4074.775909 C = 4825.542774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.518 3.482 4 O -0.471 6.471 5 C -0.142 4.142 6 C 0.134 3.866 7 F -0.136 7.136 8 C -0.172 4.172 9 C -0.069 4.069 10 C -0.131 4.131 11 C 0.010 3.990 12 C -0.090 4.090 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 H 0.100 0.900 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.020 0.980 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -10.205 9.566 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.355 6.355 5 C -0.144 4.144 6 C 0.115 3.885 7 F -0.114 7.114 8 C -0.190 4.190 9 C -0.087 4.087 10 C -0.149 4.149 11 C 0.010 3.990 12 C -0.128 4.128 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.118 0.882 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.149 -9.707 9.601 14.591 hybrid contribution -0.877 0.237 -0.618 1.098 sum 4.272 -9.470 8.983 13.734 Atomic orbital electron populations 1.23297 0.76237 1.03473 1.02982 1.86612 1.23444 1.32733 1.84385 1.20842 0.88589 0.81924 0.72797 1.90926 1.66048 1.35806 1.42737 1.18971 0.90054 1.11740 0.93638 1.17541 0.90179 1.01229 0.79558 1.91500 1.80816 1.93665 1.45446 1.20917 0.91312 1.06706 1.00104 1.21149 1.00285 0.95935 0.91331 1.21118 0.93093 1.01859 0.98863 1.20320 0.93830 0.90555 0.94287 1.21071 0.98373 1.02860 0.90454 1.19173 0.96921 0.88050 0.97035 1.21197 1.35633 0.93415 1.05961 0.92536 1.25014 0.96198 0.95542 0.97545 1.69990 1.45943 0.98100 1.38783 0.86541 0.79684 0.78080 0.83729 1.19711 1.20985 1.20941 0.88175 0.92059 0.91175 0.84334 0.84626 0.84321 0.90740 0.91872 0.95264 0.96157 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 101.05 1.07 1.54 16 2 O -0.35 -6.23 10.58 -40.57 -0.43 -6.66 16 3 C 0.52 10.51 5.51 34.54 0.19 10.70 16 4 O -0.47 -11.09 16.03 -19.25 -0.31 -11.40 16 5 C -0.14 -2.66 5.76 -104.92 -0.60 -3.26 16 6 C 0.13 2.19 7.29 -38.94 -0.28 1.90 16 7 F -0.14 -2.23 16.83 2.25 0.04 -2.19 16 8 C -0.17 -2.21 10.01 -39.57 -0.40 -2.60 16 9 C -0.07 -0.83 10.04 -39.50 -0.40 -1.23 16 10 C -0.13 -1.92 9.66 -39.64 -0.38 -2.30 16 11 C 0.01 0.19 5.17 -104.21 -0.54 -0.35 16 12 C -0.09 -1.88 4.81 -27.88 -0.13 -2.01 16 13 C 0.03 0.67 4.96 -27.88 -0.14 0.53 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 26 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 29 H 0.06 1.33 7.27 -51.93 -0.38 0.95 16 30 H 0.03 0.86 7.17 -51.93 -0.37 0.49 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -33.65 291.19 -6.29 -39.95 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -3.67 Total: -3.55 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.03 Total: -10.74 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.74 Total: -18.06 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.65 -6.29 -39.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.056 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds