Wall clock time and date at job start Sun Mar 29 2020 23:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34727 * 116.99899 * 2 1 4 4 O 1.21484 * 120.00433 * 0.02562 * 3 2 1 5 5 C 1.47572 * 119.99435 * 179.97438 * 3 2 1 6 6 C 1.39915 * 120.17407 * 270.00109 * 5 3 2 7 7 F 1.35096 * 120.11086 * 359.74911 * 6 5 3 8 8 C 1.38268 * 119.77504 * 179.72978 * 6 5 3 9 9 C 1.38252 * 120.12400 * 359.97438 * 8 6 5 10 10 C 1.38438 * 120.34533 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.22800 * 0.04210 * 10 9 8 12 12 C 1.50706 * 120.06325 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46889 * 265.00314 * 12 11 10 14 14 C 1.50706 * 109.46918 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99727 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00102 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99801 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99812 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47357 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46960 * 120.00194 * 18 16 14 21 21 H 1.48504 * 109.47226 * 239.99574 * 18 16 14 22 22 H 1.08993 * 109.47564 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47015 * 299.99994 * 1 2 3 24 24 H 1.09004 * 109.46859 * 59.99567 * 1 2 3 25 25 H 1.07996 * 119.94118 * 179.97438 * 8 6 5 26 26 H 1.07992 * 119.82933 * 180.02562 * 9 8 6 27 27 H 1.07998 * 119.88181 * 180.02562 * 10 9 8 28 28 H 1.08994 * 109.46983 * 25.00318 * 12 11 10 29 29 H 1.09002 * 109.46968 * 145.00704 * 12 11 10 30 30 H 1.09002 * 109.47195 * 299.99534 * 13 12 11 31 31 H 1.08995 * 109.47184 * 60.00120 * 13 12 11 32 32 H 0.96998 * 119.99989 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 0.0005 5 6 3.5374 1.2776 0.0006 6 6 4.2392 1.3145 1.2104 7 9 3.5697 1.2849 2.3835 8 6 5.6202 1.3811 1.2013 9 6 6.3056 1.4106 0.0010 10 6 5.6164 1.3731 -1.1990 11 6 4.2393 1.3070 -1.2067 12 6 3.4927 1.2670 -2.5153 13 6 3.0622 2.6839 -2.9002 14 6 2.3150 2.6438 -4.2084 15 1 2.1629 1.7020 -4.7148 16 6 1.8266 3.8095 -4.7594 17 7 2.0124 4.9564 -4.1430 18 14 0.9012 3.7599 -6.3812 19 1 0.8276 2.3584 -6.8665 20 1 -0.4728 4.2876 -6.1835 21 1 1.6124 4.5944 -7.3828 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 6.1646 1.4102 2.1336 26 1 7.3843 1.4622 -0.0005 27 1 6.1593 1.3961 -2.1323 28 1 4.1413 0.8609 -3.2913 29 1 2.6107 0.6350 -2.4112 30 1 2.4135 3.0900 -2.1241 31 1 3.9440 3.3159 -3.0043 32 1 1.6691 5.7765 -4.5308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:56 Heat of formation + Delta-G solvation = -138.353943 kcal Electronic energy + Delta-G solvation = -18345.646948 eV Core-core repulsion = 15184.613922 eV Total energy + Delta-G solvation = -3161.033026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.14369 -41.75193 -39.91519 -37.58496 -36.01964 -34.09413 -32.30982 -30.78346 -28.77274 -27.18972 -25.17080 -23.90250 -22.56564 -21.68428 -19.27362 -18.62552 -18.34521 -18.14956 -17.80324 -16.82645 -16.76969 -16.54170 -16.02903 -15.23749 -14.94737 -14.68852 -14.34590 -14.26227 -14.05371 -13.73270 -13.24420 -13.14750 -12.96129 -12.85465 -12.58348 -12.30775 -11.99650 -11.83172 -11.78164 -11.63353 -11.21638 -10.59861 -10.04239 -9.71520 -8.22214 -6.35092 -0.16589 0.12519 0.87067 1.37104 1.38414 1.51553 1.59451 2.37332 2.47220 2.98104 3.10873 3.57514 3.66794 3.89416 4.13898 4.20816 4.24997 4.25319 4.41504 4.55310 4.64281 4.69206 4.88682 4.98135 5.06441 5.08648 5.24919 5.36004 5.44803 5.66736 5.78501 5.79897 6.16373 6.47420 6.81795 7.34289 8.89899 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022154 B = 0.006870 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.594514 B = 4074.775909 C = 4825.542774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.516 3.484 4 O -0.521 6.521 5 C -0.173 4.173 6 C 0.115 3.885 7 F -0.142 7.142 8 C -0.151 4.151 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.020 4.020 12 C -0.076 4.076 13 C 0.034 3.966 14 C -0.544 4.544 15 H 0.065 0.935 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.282 1.282 21 H -0.273 1.273 22 H 0.146 0.854 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.180 0.820 26 H 0.189 0.811 27 H 0.160 0.840 28 H 0.094 0.906 29 H 0.050 0.950 30 H -0.015 1.015 31 H -0.001 1.001 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -11.655 9.433 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.359 3.641 4 O -0.409 6.409 5 C -0.175 4.175 6 C 0.096 3.904 7 F -0.121 7.121 8 C -0.169 4.169 9 C -0.066 4.066 10 C -0.146 4.146 11 C -0.020 4.020 12 C -0.113 4.113 13 C -0.003 4.003 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.208 1.208 21 H -0.198 1.198 22 H 0.164 0.836 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.197 0.803 26 H 0.206 0.794 27 H 0.177 0.823 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.004 0.996 31 H 0.018 0.982 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.161 -11.201 9.471 16.323 hybrid contribution -1.463 0.650 -0.488 1.674 sum 5.698 -10.551 8.983 14.983 Atomic orbital electron populations 1.23650 0.74413 1.06286 1.02407 1.86611 1.25345 1.31507 1.83633 1.21394 0.89650 0.81813 0.71220 1.90885 1.67343 1.37367 1.45331 1.19147 0.89155 1.13991 0.95227 1.17854 0.91558 1.02431 0.78554 1.91479 1.81288 1.93845 1.45471 1.21462 0.89611 1.03492 1.02350 1.21714 1.02615 0.92692 0.89547 1.21458 0.91495 1.00446 1.01215 1.20146 0.95409 0.93945 0.92538 1.20742 0.98730 0.98825 0.93012 1.18938 0.94971 0.91216 0.95154 1.21674 1.35812 0.93875 1.06831 0.91723 1.26037 0.97140 0.95042 1.01735 1.70140 1.47251 0.98956 1.40881 0.85368 0.77906 0.78898 0.78699 1.18115 1.20826 1.19841 0.83598 0.91560 0.92918 0.80310 0.79396 0.82279 0.88790 0.93145 0.99634 0.98234 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.92 16 2 O -0.35 -12.90 10.58 -56.38 -0.60 -13.50 16 3 C 0.52 22.10 5.51 70.28 0.39 22.49 16 4 O -0.52 -26.43 16.03 19.89 0.32 -26.11 16 5 C -0.17 -6.62 5.76 -20.06 -0.12 -6.73 16 6 C 0.12 3.64 7.29 22.68 0.17 3.81 16 7 F -0.14 -4.63 16.83 44.97 0.76 -3.87 16 8 C -0.15 -3.30 10.01 22.28 0.22 -3.07 16 9 C -0.05 -0.93 10.04 22.32 0.22 -0.71 16 10 C -0.13 -3.42 9.66 22.23 0.21 -3.20 16 11 C -0.02 -0.73 5.17 -19.60 -0.10 -0.83 16 12 C -0.08 -3.24 4.81 29.85 0.14 -3.10 16 13 C 0.03 1.90 4.96 29.85 0.15 2.05 16 14 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 15 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 17 N -0.93 -59.19 13.29 21.45 0.28 -58.91 16 18 Si 0.97 45.28 29.54 68.60 2.03 47.30 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 26 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 27 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.09 3.53 8.05 -2.39 -0.02 3.51 16 29 H 0.05 2.21 7.27 -2.39 -0.02 2.20 16 30 H -0.01 -0.94 7.17 -2.39 -0.02 -0.96 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -78.44 291.19 7.10 -71.34 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.13 Total: 2.42 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 3.18 Total: -18.68 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.28 Total: -58.91 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.28 Total: -39.60 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.76 Total: -3.87 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.44 7.10 -71.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.016 kcal (2) G-P(sol) polarization free energy of solvation -78.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds