Wall clock time and date at job start Sun Mar 29 2020 23:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34725 * 117.00026 * 2 1 4 4 O 1.21487 * 120.00348 * 359.97438 * 3 2 1 5 5 C 1.47597 * 120.00153 * 179.97438 * 3 2 1 6 6 C 1.39732 * 120.11983 * 5.59309 * 5 3 2 7 7 C 1.37800 * 119.87396 * 179.97438 * 6 5 3 8 8 C 1.38693 * 120.12286 * 359.97438 * 7 6 5 9 9 F 1.35098 * 119.87510 * 179.97438 * 8 7 6 10 10 C 1.38648 * 120.24740 * 359.75343 * 8 7 6 11 11 C 1.37841 * 120.12360 * 0.50008 * 10 8 7 12 12 C 1.50695 * 120.05966 * 179.77143 * 11 10 8 13 13 C 1.53005 * 109.46858 * 97.88114 * 12 11 10 14 14 C 1.50707 * 109.46920 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99908 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99914 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99820 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47410 * 89.99971 * 18 16 14 20 20 H 1.48494 * 109.47342 * 210.00362 * 18 16 14 21 21 H 1.48506 * 109.47108 * 330.00075 * 18 16 14 22 22 H 1.09004 * 109.46409 * 60.00069 * 1 2 3 23 23 H 1.08998 * 109.46837 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47357 * 300.00211 * 1 2 3 25 25 H 1.07995 * 120.06442 * 0.02562 * 6 5 3 26 26 H 1.07999 * 119.93931 * 180.02562 * 7 6 5 27 27 H 1.08005 * 119.93559 * 180.25595 * 10 8 7 28 28 H 1.09001 * 109.47643 * 337.88029 * 12 11 10 29 29 H 1.09001 * 109.47071 * 217.87779 * 12 11 10 30 30 H 1.09001 * 109.47006 * 299.99705 * 13 12 11 31 31 H 1.08991 * 109.47446 * 59.99996 * 13 12 11 32 32 H 0.96993 * 119.99815 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5376 1.2777 0.0006 6 6 4.3009 0.1131 -0.1167 7 6 5.6766 0.1912 -0.1161 8 6 6.3039 1.4227 0.0000 9 9 7.6530 1.4934 0.0006 10 6 5.5515 2.5820 0.1110 11 6 4.1747 2.5153 0.1168 12 6 3.3584 3.7757 0.2427 13 6 2.9034 4.2294 -1.1459 14 6 2.0865 5.4895 -1.0200 15 1 1.9099 5.9236 -0.0470 16 6 1.5654 6.0889 -2.1472 17 7 1.7809 5.5605 -3.3321 18 14 0.5535 7.6512 -1.9913 19 1 1.4493 8.8321 -2.0802 20 1 -0.4466 7.7048 -3.0876 21 1 -0.1469 7.6587 -0.6817 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.8135 -0.8462 -0.2084 26 1 6.2676 -0.7082 -0.2071 27 1 6.0451 3.5388 0.1970 28 1 3.9651 4.5575 0.6996 29 1 2.4853 3.5824 0.8659 30 1 3.7765 4.4227 -1.7692 31 1 2.2967 3.4477 -1.6029 32 1 1.4141 5.9818 -4.1250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059662.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:54 Heat of formation + Delta-G solvation = -111.844508 kcal Electronic energy + Delta-G solvation = -18171.558523 eV Core-core repulsion = 15011.675032 eV Total energy + Delta-G solvation = -3159.883491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.89316 -40.37147 -38.51343 -36.13740 -33.90322 -32.10603 -31.00692 -29.20419 -27.43868 -25.23300 -23.59130 -22.35774 -21.04019 -20.13943 -17.73315 -17.06316 -16.73220 -16.22560 -16.03272 -15.83380 -15.53199 -14.53537 -14.41189 -13.80814 -13.42349 -13.27753 -12.94046 -12.64038 -12.33224 -12.28442 -11.92817 -11.87020 -11.24273 -10.92629 -10.81716 -10.55950 -10.51859 -10.02552 -9.67443 -9.41356 -9.00389 -8.77490 -8.45464 -8.24702 -5.91378 -3.91694 0.78073 1.37690 2.78997 2.94514 3.36732 3.42434 3.46749 3.81966 4.24540 4.52925 4.77500 4.91356 5.02463 5.26626 5.29256 5.38258 5.44068 5.44945 5.68197 5.92938 5.97755 6.11941 6.17272 6.28082 6.54226 6.69862 6.86158 6.87286 7.17384 7.74350 7.94195 8.05262 8.21876 8.50864 9.13508 9.70052 11.20369 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.007062 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.017843 B = 3964.008452 C = 5182.560202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.491 3.509 4 O -0.455 6.455 5 C -0.140 4.140 6 C -0.034 4.034 7 C -0.187 4.187 8 C 0.132 3.868 9 F -0.138 7.138 10 C -0.169 4.169 11 C 0.035 3.965 12 C -0.091 4.091 13 C 0.041 3.959 14 C -0.507 4.507 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.065 0.935 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.010 0.990 31 H 0.027 0.973 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -13.208 7.325 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.334 3.666 4 O -0.340 6.340 5 C -0.141 4.141 6 C -0.052 4.052 7 C -0.206 4.206 8 C 0.113 3.887 9 F -0.117 7.117 10 C -0.188 4.188 11 C 0.034 3.966 12 C -0.128 4.128 13 C 0.004 3.996 14 C -0.546 4.546 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.084 0.916 23 H 0.115 0.885 24 H 0.080 0.920 25 H 0.161 0.839 26 H 0.156 0.844 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.890 -12.863 7.139 15.217 hybrid contribution -0.446 0.881 -0.145 0.998 sum 3.443 -11.983 6.994 14.295 Atomic orbital electron populations 1.23200 0.76383 1.03044 1.02900 1.86480 1.23250 1.33323 1.85335 1.21077 0.89034 0.81639 0.74807 1.91029 1.66292 1.34474 1.42225 1.18999 0.89644 0.94255 1.11194 1.21220 0.92599 0.98136 0.93276 1.20949 0.95179 0.96614 1.07862 1.18016 0.76666 0.94741 0.99295 1.91495 1.29405 1.97264 1.93524 1.21054 0.93485 0.98023 1.06230 1.20406 0.92897 0.95420 0.87867 1.21239 0.98062 0.90135 1.03397 1.18983 0.95861 0.96338 0.88446 1.21163 1.31864 1.08716 0.92841 0.92742 1.24989 0.96561 0.97545 0.95419 1.69973 1.46005 1.40002 0.97769 0.86609 0.80118 0.83694 0.77659 1.20776 1.21329 1.19913 0.91639 0.88544 0.92005 0.83905 0.84425 0.83837 0.92283 0.89192 0.97181 0.95457 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.57 101.05 1.07 1.54 16 2 O -0.37 -5.48 9.83 -40.56 -0.40 -5.88 16 3 C 0.49 8.93 7.76 34.55 0.27 9.19 16 4 O -0.46 -9.96 11.38 -19.26 -0.22 -10.18 16 5 C -0.14 -2.37 5.87 -104.98 -0.62 -2.99 16 6 C -0.03 -0.46 9.61 -39.18 -0.38 -0.83 16 7 C -0.19 -2.36 10.01 -39.57 -0.40 -2.75 16 8 C 0.13 1.90 7.31 -39.26 -0.29 1.61 16 9 F -0.14 -1.94 17.26 2.25 0.04 -1.90 16 10 C -0.17 -2.72 9.64 -39.58 -0.38 -3.10 16 11 C 0.03 0.63 5.17 -104.23 -0.54 0.10 16 12 C -0.09 -1.97 4.54 -27.88 -0.13 -2.10 16 13 C 0.04 1.09 4.49 -27.88 -0.13 0.96 16 14 C -0.51 -14.84 9.11 -34.44 -0.31 -15.16 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 18 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.14 1.55 7.62 -52.49 -0.40 1.15 16 26 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.14 2.15 8.05 -52.48 -0.42 1.72 16 28 H 0.06 1.19 8.03 -51.93 -0.42 0.78 16 29 H 0.09 2.01 5.95 -51.93 -0.31 1.70 16 30 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.03 0.79 6.58 -51.93 -0.34 0.45 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -32.87 285.04 -6.04 -38.90 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -3.54 Total: -3.52 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.92 Total: -11.99 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.74 Total: -27.03 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.62 Total: -16.05 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.87 -6.04 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059662.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.944 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds