Wall clock time and date at job start Sun Mar 29 2020 23:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34725 * 117.00026 * 2 1 4 4 O 1.21487 * 120.00348 * 359.97438 * 3 2 1 5 5 C 1.47597 * 120.00153 * 179.97438 * 3 2 1 6 6 C 1.39732 * 120.11983 * 5.59309 * 5 3 2 7 7 C 1.37800 * 119.87396 * 179.97438 * 6 5 3 8 8 C 1.38693 * 120.12286 * 359.97438 * 7 6 5 9 9 F 1.35098 * 119.87510 * 179.97438 * 8 7 6 10 10 C 1.38648 * 120.24740 * 359.75343 * 8 7 6 11 11 C 1.37841 * 120.12360 * 0.50008 * 10 8 7 12 12 C 1.50695 * 120.05966 * 179.77143 * 11 10 8 13 13 C 1.53005 * 109.46858 * 97.88114 * 12 11 10 14 14 C 1.50707 * 109.46920 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99908 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99914 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99820 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00100 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47410 * 89.99971 * 18 16 14 20 20 H 1.48494 * 109.47342 * 210.00362 * 18 16 14 21 21 H 1.48506 * 109.47108 * 330.00075 * 18 16 14 22 22 H 1.09004 * 109.46409 * 60.00069 * 1 2 3 23 23 H 1.08998 * 109.46837 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47357 * 300.00211 * 1 2 3 25 25 H 1.07995 * 120.06442 * 0.02562 * 6 5 3 26 26 H 1.07999 * 119.93931 * 180.02562 * 7 6 5 27 27 H 1.08005 * 119.93559 * 180.25595 * 10 8 7 28 28 H 1.09001 * 109.47643 * 337.88029 * 12 11 10 29 29 H 1.09001 * 109.47071 * 217.87779 * 12 11 10 30 30 H 1.09001 * 109.47006 * 299.99705 * 13 12 11 31 31 H 1.08991 * 109.47446 * 59.99996 * 13 12 11 32 32 H 0.96993 * 119.99815 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5376 1.2777 0.0006 6 6 4.3009 0.1131 -0.1167 7 6 5.6766 0.1912 -0.1161 8 6 6.3039 1.4227 0.0000 9 9 7.6530 1.4934 0.0006 10 6 5.5515 2.5820 0.1110 11 6 4.1747 2.5153 0.1168 12 6 3.3584 3.7757 0.2427 13 6 2.9034 4.2294 -1.1459 14 6 2.0865 5.4895 -1.0200 15 1 1.9099 5.9236 -0.0470 16 6 1.5654 6.0889 -2.1472 17 7 1.7809 5.5605 -3.3321 18 14 0.5535 7.6512 -1.9913 19 1 1.4493 8.8321 -2.0802 20 1 -0.4466 7.7048 -3.0876 21 1 -0.1469 7.6587 -0.6817 22 1 -0.3632 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.8135 -0.8462 -0.2084 26 1 6.2676 -0.7082 -0.2071 27 1 6.0451 3.5388 0.1970 28 1 3.9651 4.5575 0.6996 29 1 2.4853 3.5824 0.8659 30 1 3.7765 4.4227 -1.7692 31 1 2.2967 3.4477 -1.6029 32 1 1.4141 5.9818 -4.1250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059662.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:54 Heat of formation + Delta-G solvation = -131.150418 kcal Electronic energy + Delta-G solvation = -18172.395690 eV Core-core repulsion = 15011.675032 eV Total energy + Delta-G solvation = -3160.720658 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.02392 -41.71369 -39.76308 -37.50599 -35.80264 -33.95598 -32.23967 -30.89837 -28.57208 -27.09440 -24.86337 -23.97638 -22.55357 -21.61997 -19.01267 -18.64875 -18.05615 -17.97442 -17.33971 -17.13384 -16.67382 -16.50488 -15.69231 -15.18581 -14.82930 -14.56312 -14.37894 -14.19802 -13.98738 -13.69299 -13.46547 -13.01479 -12.95541 -12.84920 -12.53638 -12.14069 -11.99297 -11.65754 -11.58252 -11.26234 -10.97451 -10.51321 -10.00939 -9.78100 -8.18214 -6.27451 -0.46648 0.19160 1.36961 1.39485 1.46977 1.50514 1.73072 2.40615 2.57765 3.07880 3.14822 3.61940 3.70681 3.86448 4.08740 4.24517 4.36508 4.38242 4.56801 4.66126 4.75526 4.84897 4.87660 5.01018 5.05786 5.18871 5.24884 5.36670 5.56061 5.74070 5.83169 5.88416 6.27069 6.80331 6.89077 7.39336 8.94068 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.007062 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.017843 B = 3964.008452 C = 5182.560202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.491 3.509 4 O -0.506 6.506 5 C -0.158 4.158 6 C -0.020 4.020 7 C -0.164 4.164 8 C 0.135 3.865 9 F -0.133 7.133 10 C -0.177 4.177 11 C 0.007 3.993 12 C -0.077 4.077 13 C 0.052 3.948 14 C -0.532 4.532 15 H 0.056 0.944 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.266 1.266 22 H 0.048 0.952 23 H 0.143 0.857 24 H 0.060 0.940 25 H 0.177 0.823 26 H 0.181 0.819 27 H 0.146 0.854 28 H 0.064 0.936 29 H 0.077 0.923 30 H -0.017 1.017 31 H -0.003 1.003 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -14.835 7.953 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.337 3.663 4 O -0.395 6.395 5 C -0.159 4.159 6 C -0.037 4.037 7 C -0.182 4.182 8 C 0.115 3.885 9 F -0.112 7.112 10 C -0.195 4.195 11 C 0.006 3.994 12 C -0.114 4.114 13 C 0.015 3.985 14 C -0.570 4.570 15 H 0.074 0.926 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.191 1.191 22 H 0.067 0.933 23 H 0.161 0.839 24 H 0.079 0.921 25 H 0.194 0.806 26 H 0.198 0.802 27 H 0.164 0.836 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.001 0.999 31 H 0.015 0.985 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.520 -14.518 7.782 17.081 hybrid contribution -0.598 1.249 -0.342 1.426 sum 3.922 -13.269 7.440 15.710 Atomic orbital electron populations 1.23521 0.74754 1.05779 1.02074 1.86468 1.24783 1.31404 1.84543 1.21439 0.89681 0.81771 0.73431 1.91004 1.67406 1.36230 1.44823 1.19147 0.89346 0.95162 1.12251 1.21549 0.92827 0.97981 0.91381 1.21396 0.94964 0.97232 1.04654 1.18064 0.76771 0.94833 0.98802 1.91514 1.28998 1.97267 1.93399 1.21065 0.92759 0.99278 1.06424 1.20098 0.93559 0.94585 0.91139 1.20836 0.98290 0.92329 0.99925 1.18728 0.93907 0.94821 0.91012 1.21605 1.32450 1.09826 0.93111 0.92615 1.25958 0.97735 1.01307 0.94938 1.70111 1.47087 1.41771 0.98606 0.85459 0.78476 0.79223 0.77956 1.19390 1.20668 1.19079 0.93326 0.83912 0.92108 0.80576 0.80158 0.83633 0.91755 0.90458 0.99854 0.98514 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.57 113.37 1.20 1.94 16 2 O -0.35 -10.23 9.83 -56.35 -0.55 -10.78 16 3 C 0.49 18.13 7.76 70.29 0.55 18.68 16 4 O -0.51 -23.31 11.38 19.88 0.23 -23.08 16 5 C -0.16 -5.29 5.87 -20.10 -0.12 -5.41 16 6 C -0.02 -0.46 9.61 22.53 0.22 -0.25 16 7 C -0.16 -3.45 10.01 22.27 0.22 -3.23 16 8 C 0.13 3.54 7.31 22.48 0.16 3.70 16 9 F -0.13 -3.37 17.26 44.97 0.78 -2.60 16 10 C -0.18 -5.61 9.64 22.27 0.21 -5.40 16 11 C 0.01 0.25 5.17 -19.61 -0.10 0.15 16 12 C -0.08 -3.48 4.54 29.85 0.14 -3.35 16 13 C 0.05 2.97 4.49 29.85 0.13 3.10 16 14 C -0.53 -32.30 9.11 25.60 0.23 -32.07 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 17 N -0.93 -59.58 13.29 21.45 0.28 -59.29 16 18 Si 0.96 46.53 29.54 68.60 2.03 48.55 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.14 1.97 8.14 -2.39 -0.02 1.96 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.18 2.99 7.62 -2.91 -0.02 2.97 16 26 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.15 4.41 8.05 -2.91 -0.02 4.38 16 28 H 0.06 2.73 8.03 -2.39 -0.02 2.71 16 29 H 0.08 3.67 5.95 -2.39 -0.01 3.65 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.00 -0.22 6.58 -2.39 -0.02 -0.23 16 32 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -74.51 285.04 7.20 -67.31 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 1.13 Total: 1.70 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 3.31 Total: -21.81 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.28 Total: -59.29 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.33 Total: -33.87 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -74.51 7.20 -67.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059662.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.838 kcal (2) G-P(sol) polarization free energy of solvation -74.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds