Wall clock time and date at job start Sun Mar 29 2020 23:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42094 * 109.47179 * 2 1 4 4 C 1.76205 * 102.99779 * 250.94291 * 2 1 3 5 5 C 1.38228 * 120.00116 * 270.21083 * 4 2 1 6 6 C 1.38238 * 120.00114 * 180.26456 * 5 4 2 7 7 C 1.38234 * 119.99675 * 359.50218 * 6 5 4 8 8 C 1.50702 * 120.00257 * 180.25732 * 7 6 5 9 9 C 1.53004 * 109.46774 * 90.00005 * 8 7 6 10 10 C 1.52999 * 109.46984 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.47181 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99855 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00218 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99814 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00280 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46886 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46958 * 120.00005 * 15 13 11 18 18 H 1.48496 * 109.47260 * 240.00056 * 15 13 11 19 19 C 1.38235 * 120.00220 * 0.28720 * 7 6 5 20 20 C 1.38234 * 119.99800 * 90.00150 * 4 2 1 21 21 H 1.09003 * 109.47178 * 169.05482 * 1 2 3 22 22 H 1.09002 * 109.47297 * 289.05709 * 1 2 3 23 23 H 1.09004 * 109.46784 * 49.05483 * 1 2 3 24 24 H 1.08004 * 120.00270 * 0.03858 * 5 4 2 25 25 H 1.08002 * 120.00519 * 179.78838 * 6 5 4 26 26 H 1.08993 * 109.47429 * 210.00613 * 8 7 6 27 27 H 1.08998 * 109.46961 * 330.00864 * 8 7 6 28 28 H 1.08993 * 109.47638 * 300.00479 * 9 8 7 29 29 H 1.09003 * 109.47116 * 60.00528 * 9 8 7 30 30 H 1.09005 * 109.46985 * 300.00097 * 10 9 8 31 31 H 1.09001 * 109.47591 * 59.99973 * 10 9 8 32 32 H 0.96998 * 119.99938 * 180.02562 * 14 13 11 33 33 H 1.07996 * 120.00471 * 179.97438 * 19 7 6 34 34 H 1.08001 * 120.00294 * 359.97438 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5606 -1.6228 5 6 2.3615 -1.9123 -1.8694 6 6 2.6778 -2.3517 -3.1414 7 6 2.8328 -1.4400 -4.1689 8 6 3.1719 -1.9194 -5.5568 9 6 1.8811 -2.1882 -6.3331 10 6 2.2253 -2.6754 -7.7419 11 6 0.9539 -2.9396 -8.5068 12 1 -0.0037 -2.7759 -8.0352 13 6 1.0134 -3.3892 -9.8087 14 7 2.1797 -3.5881 -10.3831 15 14 -0.5625 -3.7174 -10.7565 16 1 -1.7318 -3.4184 -9.8913 17 1 -0.6048 -2.8509 -11.9618 18 1 -0.6037 -5.1430 -11.1701 19 6 2.6774 -0.0886 -3.9232 20 6 2.3658 0.3511 -2.6502 21 1 -0.3634 -1.0090 -0.1951 22 1 -0.3634 0.3355 0.9713 23 1 -0.3633 0.6735 -0.7763 24 1 2.2361 -2.6249 -1.0676 25 1 2.7993 -3.4075 -3.3334 26 1 3.7540 -1.1559 -6.0728 27 1 3.7546 -2.8382 -5.4916 28 1 1.2990 -2.9516 -5.8171 29 1 1.2983 -1.2693 -6.3983 30 1 2.8076 -1.9121 -8.2582 31 1 2.8079 -3.5943 -7.6765 32 1 2.2216 -3.9041 -11.2992 33 1 2.7988 0.6237 -4.7258 34 1 2.2440 1.4069 -2.4584 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:19 Heat of formation + Delta-G solvation = -61.712078 kcal Electronic energy + Delta-G solvation = -15379.291114 eV Core-core repulsion = 12787.794705 eV Total energy + Delta-G solvation = -2591.496410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27449 -36.87401 -36.50668 -34.59155 -32.01816 -31.89892 -29.64120 -28.54443 -25.55161 -23.71056 -22.76188 -21.67492 -19.03849 -18.51694 -17.52647 -16.68194 -16.59316 -16.10923 -15.75820 -15.37647 -15.06333 -14.59301 -14.47742 -14.32960 -14.23396 -13.58310 -13.40105 -13.21023 -13.08455 -12.73950 -12.63726 -12.45850 -12.31449 -12.04899 -11.49787 -11.46393 -11.30276 -11.06947 -10.58413 -9.94372 -9.89937 -9.30468 -8.22599 -6.34031 -0.03547 0.43401 1.02381 1.38020 1.38424 1.51782 1.82244 2.38815 2.67666 3.02791 3.10334 3.80856 3.87328 4.07869 4.22174 4.34108 4.47654 4.49979 4.50975 4.62457 4.66527 4.89931 4.94083 5.12117 5.14387 5.19568 5.20303 5.29944 5.36366 5.49540 5.62989 5.76451 5.82683 6.02583 6.22721 6.82894 7.35413 8.89285 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.042545 B = 0.003546 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.974957 B = 7893.673689 C = 8160.783916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.409 4.591 3 O -0.930 6.930 4 C -0.481 4.481 5 C -0.027 4.027 6 C -0.143 4.143 7 C -0.048 4.048 8 C -0.082 4.082 9 C -0.087 4.087 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.057 0.943 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.279 1.279 18 H -0.274 1.274 19 C -0.154 4.154 20 C -0.076 4.076 21 H 0.140 0.860 22 H 0.123 0.877 23 H 0.056 0.944 24 H 0.193 0.807 25 H 0.148 0.852 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.040 0.960 30 H -0.011 1.011 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 0.558 24.340 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 1.607 4.393 3 O -0.926 6.926 4 C -0.576 4.576 5 C -0.046 4.046 6 C -0.162 4.162 7 C -0.048 4.048 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.200 1.200 19 C -0.173 4.173 20 C -0.096 4.096 21 H 0.159 0.841 22 H 0.141 0.859 23 H 0.075 0.925 24 H 0.210 0.790 25 H 0.165 0.835 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.779 0.791 24.910 24.935 hybrid contribution -1.293 1.553 -3.121 3.718 sum -2.072 2.344 21.790 22.013 Atomic orbital electron populations 1.27787 1.21136 1.09360 1.07407 1.68440 0.85462 0.96157 0.89214 1.92963 1.75770 1.41027 1.82876 1.27928 1.13029 1.00243 1.16424 1.21407 0.92130 0.93583 0.97465 1.21583 1.01032 1.00425 0.93159 1.20299 0.94962 0.93636 0.95900 1.20706 0.98045 1.01626 0.91510 1.21372 0.95932 0.99644 0.95499 1.19044 0.95547 0.94708 0.92136 1.21726 0.93838 1.44294 0.98421 0.92465 1.25986 0.99779 0.95194 0.98876 1.70100 1.26030 1.47194 1.13982 0.85398 0.79307 0.78038 0.78306 1.18733 1.20447 1.19990 1.21206 1.02937 0.95968 0.97234 1.21065 0.96189 0.99143 0.93161 0.84143 0.85852 0.92501 0.78953 0.83470 0.91997 0.90160 0.92568 0.94135 0.99240 0.98346 0.92704 0.86783 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.80 10.70 113.37 1.21 -4.59 16 2 S 1.41 19.60 14.19 -56.49 -0.80 18.80 16 3 O -0.93 -27.18 16.90 -148.98 -2.52 -29.70 16 4 C -0.48 -10.01 5.61 22.27 0.12 -9.88 16 5 C -0.03 -0.45 9.75 22.27 0.22 -0.23 16 6 C -0.14 -3.27 9.70 22.27 0.22 -3.05 16 7 C -0.05 -1.43 5.13 -19.87 -0.10 -1.53 16 8 C -0.08 -2.80 5.35 29.85 0.16 -2.64 16 9 C -0.09 -3.64 5.14 30.60 0.16 -3.48 16 10 C 0.02 1.21 4.97 29.85 0.15 1.36 16 11 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 12 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 13 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 14 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 15 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 C -0.15 -4.77 9.70 22.27 0.22 -4.56 16 20 C -0.08 -2.21 9.44 22.27 0.21 -2.00 16 21 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 25 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 26 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 27 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H -0.01 -0.63 8.14 -2.38 -0.02 -0.64 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 33 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.11 3.31 7.46 -2.91 -0.02 3.28 16 Total: -1.00 -81.69 306.14 3.31 -78.39 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.06 Total: 4.27 kcal Atomic # 6 Polarization: -64.74 SS G_CDS: 3.26 Total: -61.48 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.90 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -2.52 Total: -29.70 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 19.60 SS G_CDS: -0.80 Total: 18.80 kcal Total: -81.69 3.31 -78.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.674 kcal (2) G-P(sol) polarization free energy of solvation -81.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds