Wall clock time and date at job start Sun Mar 29 2020 23:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46862 * 2 1 4 4 C 1.76203 * 102.99972 * 109.05528 * 2 1 3 5 5 C 1.38234 * 120.00235 * 90.00017 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 C 1.52997 * 109.47229 * 89.99423 * 8 7 6 10 10 C 1.52998 * 109.47490 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47830 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99350 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00337 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99914 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00074 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46996 * 90.00193 * 15 13 11 17 17 H 1.48503 * 109.47311 * 210.00143 * 15 13 11 18 18 H 1.48498 * 109.47167 * 330.00145 * 15 13 11 19 19 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 20 20 C 1.38234 * 120.00033 * 0.49775 * 19 7 6 21 21 H 1.09002 * 109.47402 * 310.94368 * 1 2 3 22 22 H 1.08995 * 109.47434 * 70.94719 * 1 2 3 23 23 H 1.09001 * 109.47284 * 190.94928 * 1 2 3 24 24 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 25 25 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 26 26 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 27 27 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 28 28 H 1.09004 * 109.47454 * 300.00132 * 9 8 7 29 29 H 1.09006 * 109.47180 * 60.00059 * 9 8 7 30 30 H 1.08999 * 109.47245 * 300.00709 * 10 9 8 31 31 H 1.09006 * 109.46881 * 59.99852 * 10 9 8 32 32 H 0.97001 * 119.99867 * 179.97438 * 14 13 11 33 33 H 1.07999 * 119.99934 * 180.25938 * 19 7 6 34 34 H 1.08001 * 120.00294 * 179.76453 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3658 -1.9119 1.8686 6 6 2.6773 -2.3516 3.1416 7 6 2.8279 -1.4403 4.1700 8 6 3.1614 -1.9201 5.5591 9 6 4.6809 -1.9758 5.7284 10 6 5.0195 -2.4635 7.1385 11 6 6.5162 -2.5177 7.3056 12 1 7.1614 -2.2324 6.4879 13 6 7.0618 -2.9315 8.5022 14 7 6.2760 -3.2794 9.4978 15 14 8.9171 -2.9994 8.7090 16 1 9.4059 -1.6946 9.2226 17 1 9.2688 -4.0736 9.6721 18 1 9.5513 -3.2839 7.3968 19 6 2.6777 -0.0885 3.9231 20 6 2.3667 0.3512 2.6500 21 1 -0.3634 0.6734 0.7762 22 1 -0.3634 0.3354 -0.9713 23 1 -0.3634 -1.0090 0.1952 24 1 2.2439 -2.6242 1.0660 25 1 2.7984 -3.4075 3.3336 26 1 2.7390 -1.2327 6.2920 27 1 2.7423 -2.9150 5.7102 28 1 5.1033 -2.6632 4.9954 29 1 5.1000 -0.9809 5.5772 30 1 4.5970 -1.7765 7.8718 31 1 4.6004 -3.4584 7.2892 32 1 6.6599 -3.5709 10.3396 33 1 2.7995 0.6238 4.7257 34 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:21 Heat of formation + Delta-G solvation = -37.704866 kcal Electronic energy + Delta-G solvation = -15353.382916 eV Core-core repulsion = 12762.927537 eV Total energy + Delta-G solvation = -2590.455379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23288 -35.86201 -34.83897 -32.70679 -30.91233 -30.44624 -29.01994 -26.86998 -23.79207 -22.71448 -21.31145 -20.07053 -18.18558 -16.74493 -16.24138 -15.55088 -15.12423 -14.97976 -14.47749 -14.10155 -13.88703 -13.68753 -13.28334 -13.05092 -12.92640 -12.43078 -12.07763 -11.91058 -11.51811 -11.43140 -11.02835 -10.75032 -10.72684 -10.53616 -10.29871 -9.71727 -9.45987 -9.16416 -8.90463 -8.79282 -8.43338 -8.35620 -6.00755 -4.03126 0.91982 1.43781 1.78725 2.56270 3.31819 3.37902 3.41633 3.62100 3.85690 4.45755 4.83924 4.92902 4.98507 5.02675 5.07022 5.35037 5.46139 5.48555 5.70434 5.73710 5.83925 6.00134 6.09017 6.25782 6.28578 6.40285 6.51553 6.84361 6.85092 6.99834 7.10952 7.66288 7.80013 7.99187 8.42043 9.03987 9.61095 11.10562 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.049416 B = 0.003446 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.483249 B = 8123.988181 C = 8322.963614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.330 4.670 3 O -0.862 6.862 4 C -0.477 4.477 5 C -0.043 4.043 6 C -0.138 4.138 7 C -0.025 4.025 8 C -0.092 4.092 9 C -0.102 4.102 10 C 0.021 3.979 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.136 4.136 20 C -0.052 4.052 21 H 0.079 0.921 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.124 0.876 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 1.202 -19.449 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.528 4.472 3 O -0.858 6.858 4 C -0.574 4.574 5 C -0.063 4.063 6 C -0.157 4.157 7 C -0.026 4.026 8 C -0.129 4.129 9 C -0.140 4.140 10 C -0.016 4.016 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.155 4.155 20 C -0.071 4.071 21 H 0.098 0.902 22 H 0.121 0.879 23 H 0.128 0.872 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.650 1.420 -20.007 23.196 hybrid contribution 0.143 1.225 2.108 2.442 sum -11.507 2.645 -17.900 21.443 Atomic orbital electron populations 1.27780 1.23001 1.07802 1.06959 1.69307 0.85686 0.99447 0.92756 1.93098 1.73073 1.37312 1.82287 1.27401 1.14527 0.99752 1.15706 1.20774 0.95232 0.93362 0.96905 1.21227 1.01704 0.99989 0.92803 1.20458 0.92013 0.93285 0.96797 1.20923 0.99482 1.01446 0.91067 1.21629 0.90657 1.00686 1.01025 1.19120 0.96335 0.96356 0.89804 1.21262 0.92125 1.44195 0.98324 0.92707 1.25027 0.98027 0.95403 0.96029 1.69965 1.34703 1.45246 1.03663 0.86595 0.85757 0.77706 0.77969 1.20666 1.21200 1.19838 1.21204 1.01585 0.95698 0.97040 1.21041 0.94535 0.99082 0.92426 0.90159 0.87926 0.87183 0.84921 0.85323 0.91162 0.90972 0.93133 0.93277 0.96614 0.96521 0.93005 0.85796 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.46 10.70 101.05 1.08 -2.37 16 2 S 1.33 11.00 14.19 -107.50 -1.53 9.47 16 3 O -0.86 -13.03 16.90 -35.23 -0.60 -13.62 16 4 C -0.48 -5.48 5.61 -39.58 -0.22 -5.70 16 5 C -0.04 -0.44 9.75 -39.58 -0.39 -0.83 16 6 C -0.14 -1.76 9.70 -39.58 -0.38 -2.14 16 7 C -0.03 -0.38 5.13 -104.63 -0.54 -0.92 16 8 C -0.09 -1.55 5.34 -27.89 -0.15 -1.69 16 9 C -0.10 -2.11 5.13 -26.73 -0.14 -2.25 16 10 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 11 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.14 -2.04 9.70 -39.58 -0.38 -2.42 16 20 C -0.05 -0.74 9.44 -39.58 -0.37 -1.11 16 21 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 25 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 27 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.79 7.45 -52.49 -0.39 1.39 16 LS Contribution 306.14 15.07 4.61 4.61 Total: -1.00 -36.49 306.14 -8.83 -45.33 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -5.00 Total: -3.50 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -2.04 Total: -32.75 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.60 Total: -13.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 11.00 SS G_CDS: -1.53 Total: 9.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.49 -8.83 -45.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.623 kcal (2) G-P(sol) polarization free energy of solvation -36.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds