Wall clock time and date at job start Sun Mar 29 2020 23:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 109.46862 * 2 1 4 4 C 1.76203 * 102.99972 * 109.05528 * 2 1 3 5 5 C 1.38234 * 120.00235 * 90.00017 * 4 2 1 6 6 C 1.38234 * 120.00240 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.26327 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 C 1.52997 * 109.47229 * 89.99423 * 8 7 6 10 10 C 1.52998 * 109.47490 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47830 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99350 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00337 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99914 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00074 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46996 * 90.00193 * 15 13 11 17 17 H 1.48503 * 109.47311 * 210.00143 * 15 13 11 18 18 H 1.48498 * 109.47167 * 330.00145 * 15 13 11 19 19 C 1.38238 * 119.99752 * 359.47832 * 7 6 5 20 20 C 1.38234 * 120.00033 * 0.49775 * 19 7 6 21 21 H 1.09002 * 109.47402 * 310.94368 * 1 2 3 22 22 H 1.08995 * 109.47434 * 70.94719 * 1 2 3 23 23 H 1.09001 * 109.47284 * 190.94928 * 1 2 3 24 24 H 1.07999 * 119.99751 * 359.97438 * 5 4 2 25 25 H 1.08002 * 119.99744 * 179.97438 * 6 5 4 26 26 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 27 27 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 28 28 H 1.09004 * 109.47454 * 300.00132 * 9 8 7 29 29 H 1.09006 * 109.47180 * 60.00059 * 9 8 7 30 30 H 1.08999 * 109.47245 * 300.00709 * 10 9 8 31 31 H 1.09006 * 109.46881 * 59.99852 * 10 9 8 32 32 H 0.97001 * 119.99867 * 179.97438 * 14 13 11 33 33 H 1.07999 * 119.99934 * 180.25938 * 19 7 6 34 34 H 1.08001 * 120.00294 * 179.76453 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2103 -0.5605 1.6228 5 6 2.3658 -1.9119 1.8686 6 6 2.6773 -2.3516 3.1416 7 6 2.8279 -1.4403 4.1700 8 6 3.1614 -1.9201 5.5591 9 6 4.6809 -1.9758 5.7284 10 6 5.0195 -2.4635 7.1385 11 6 6.5162 -2.5177 7.3056 12 1 7.1614 -2.2324 6.4879 13 6 7.0618 -2.9315 8.5022 14 7 6.2760 -3.2794 9.4978 15 14 8.9171 -2.9994 8.7090 16 1 9.4059 -1.6946 9.2226 17 1 9.2688 -4.0736 9.6721 18 1 9.5513 -3.2839 7.3968 19 6 2.6777 -0.0885 3.9231 20 6 2.3667 0.3512 2.6500 21 1 -0.3634 0.6734 0.7762 22 1 -0.3634 0.3354 -0.9713 23 1 -0.3634 -1.0090 0.1952 24 1 2.2439 -2.6242 1.0660 25 1 2.7984 -3.4075 3.3336 26 1 2.7390 -1.2327 6.2920 27 1 2.7423 -2.9150 5.7102 28 1 5.1033 -2.6632 4.9954 29 1 5.1000 -0.9809 5.5772 30 1 4.5970 -1.7765 7.8718 31 1 4.6004 -3.4584 7.2892 32 1 6.6599 -3.5709 10.3396 33 1 2.7995 0.6238 4.7257 34 1 2.2456 1.4071 2.4579 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:21 Heat of formation + Delta-G solvation = -61.608909 kcal Electronic energy + Delta-G solvation = -15354.419473 eV Core-core repulsion = 12762.927537 eV Total energy + Delta-G solvation = -2591.491936 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27358 -36.87042 -36.50476 -34.59001 -32.01572 -31.89854 -29.63538 -28.54155 -25.54905 -23.70938 -22.75866 -21.67389 -19.03742 -18.51179 -17.52363 -16.68030 -16.59123 -16.10437 -15.76576 -15.37426 -15.06164 -14.57529 -14.50551 -14.29365 -14.21605 -13.62598 -13.37191 -13.20307 -13.08343 -12.72075 -12.63016 -12.47275 -12.31455 -12.04765 -11.49336 -11.42509 -11.28455 -11.13321 -10.57723 -9.92600 -9.89890 -9.30018 -8.22322 -6.33707 -0.03177 0.43417 1.01846 1.38444 1.39711 1.51127 1.83159 2.39248 2.67722 3.03600 3.10551 3.80983 3.87445 4.08203 4.22334 4.35142 4.47737 4.50008 4.51840 4.62922 4.66842 4.90099 4.94303 5.12195 5.14350 5.19780 5.20368 5.30078 5.36438 5.49739 5.63128 5.76611 5.82869 6.02684 6.23204 6.82936 7.35639 8.89359 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.049416 B = 0.003446 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.483249 B = 8123.988181 C = 8322.963614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.405 4.595 3 O -0.931 6.931 4 C -0.480 4.480 5 C -0.028 4.028 6 C -0.143 4.143 7 C -0.048 4.048 8 C -0.081 4.081 9 C -0.088 4.088 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.057 0.943 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.154 4.154 20 C -0.077 4.077 21 H 0.057 0.943 22 H 0.122 0.878 23 H 0.142 0.858 24 H 0.193 0.807 25 H 0.148 0.852 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.039 0.961 30 H -0.011 1.011 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.114 0.886 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -0.280 -21.965 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.603 4.397 3 O -0.927 6.927 4 C -0.575 4.575 5 C -0.046 4.046 6 C -0.162 4.162 7 C -0.048 4.048 8 C -0.118 4.118 9 C -0.126 4.126 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.075 0.925 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.173 4.173 20 C -0.096 4.096 21 H 0.077 0.923 22 H 0.141 0.859 23 H 0.160 0.840 24 H 0.210 0.790 25 H 0.165 0.835 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.826 -0.058 -22.516 25.433 hybrid contribution 0.072 1.675 2.811 3.273 sum -11.754 1.617 -19.705 23.002 Atomic orbital electron populations 1.27757 1.20791 1.09455 1.07439 1.68463 0.85768 0.96235 0.89251 1.92974 1.75923 1.40978 1.82863 1.27926 1.13065 1.00228 1.16311 1.21406 0.92208 0.93595 0.97403 1.21582 1.00906 1.00509 0.93195 1.20298 0.94518 0.93682 0.96328 1.20698 0.96477 1.01908 0.92740 1.21384 0.93732 0.99800 0.97663 1.19030 0.95117 0.94798 0.92370 1.21706 0.93580 1.44383 0.98750 0.92496 1.25981 1.03440 0.94772 0.95612 1.70091 1.37046 1.45909 1.04247 0.85454 0.79264 0.77995 0.78395 1.19976 1.20411 1.18678 1.21206 1.02806 0.95912 0.97414 1.21064 0.96267 0.99118 0.93138 0.92326 0.85917 0.83953 0.78960 0.83476 0.91949 0.90122 0.92611 0.94181 0.99234 0.98324 0.92691 0.86794 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -5.11 10.70 113.37 1.21 -3.89 16 2 S 1.40 19.54 14.19 -56.49 -0.80 18.74 16 3 O -0.93 -27.61 16.90 -148.98 -2.52 -30.13 16 4 C -0.48 -9.99 5.61 22.27 0.12 -9.86 16 5 C -0.03 -0.45 9.75 22.27 0.22 -0.23 16 6 C -0.14 -3.27 9.70 22.27 0.22 -3.05 16 7 C -0.05 -1.44 5.13 -19.87 -0.10 -1.54 16 8 C -0.08 -2.77 5.34 29.84 0.16 -2.62 16 9 C -0.09 -3.73 5.13 30.59 0.16 -3.57 16 10 C 0.02 1.28 4.97 29.85 0.15 1.43 16 11 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 12 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 14 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 15 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 C -0.15 -4.77 9.70 22.27 0.22 -4.56 16 20 C -0.08 -2.22 9.44 22.27 0.21 -2.01 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 25 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 26 H 0.06 2.18 8.09 -2.39 -0.02 2.16 16 27 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 28 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.11 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.11 3.31 7.45 -2.91 -0.02 3.29 16 Total: -1.00 -82.18 306.14 3.31 -78.87 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.06 Total: 3.78 kcal Atomic # 6 Polarization: -64.32 SS G_CDS: 3.26 Total: -61.07 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.08 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -2.52 Total: -30.13 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 19.54 SS G_CDS: -0.80 Total: 18.74 kcal Total: -82.18 3.31 -78.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.260 kcal (2) G-P(sol) polarization free energy of solvation -82.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds