Wall clock time and date at job start Sun Mar 29 2020 23:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.00740 * 2 1 4 4 C 1.50698 * 119.99161 * 0.02562 * 3 2 1 5 5 C 1.38223 * 120.01610 * 180.02562 * 3 2 1 6 6 C 1.50700 * 119.98804 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47106 * 85.02310 * 6 5 3 8 8 C 1.52993 * 109.46894 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47228 * 179.97438 * 8 7 6 10 10 H 1.08009 * 119.99538 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00460 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99933 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00325 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47095 * 59.99298 * 13 11 9 15 15 H 1.48497 * 109.47189 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46887 * 300.00166 * 13 11 9 17 17 C 1.38268 * 120.02306 * 0.02562 * 5 3 2 18 18 C 1.38192 * 120.01363 * 0.23939 * 17 5 3 19 19 C 1.38336 * 120.00543 * 180.02562 * 2 1 3 20 20 Cl 1.73596 * 120.01668 * 0.02562 * 19 2 1 21 21 H 1.09003 * 109.47018 * 90.00120 * 1 2 3 22 22 H 1.09004 * 109.47335 * 209.99593 * 1 2 3 23 23 H 1.09001 * 109.47421 * 330.00188 * 1 2 3 24 24 H 1.09007 * 109.46851 * 270.01734 * 4 3 2 25 25 H 1.08993 * 109.47703 * 30.01799 * 4 3 2 26 26 H 1.09006 * 109.47126 * 150.02691 * 4 3 2 27 27 H 1.09004 * 109.46620 * 205.01999 * 6 5 3 28 28 H 1.08996 * 109.47235 * 325.01969 * 6 5 3 29 29 H 1.09002 * 109.46962 * 299.99903 * 7 6 5 30 30 H 1.08996 * 109.47352 * 59.99731 * 7 6 5 31 31 H 1.08998 * 109.47299 * 299.99226 * 8 7 6 32 32 H 1.09003 * 109.47710 * 59.99881 * 8 7 6 33 33 H 0.96998 * 120.00252 * 179.97438 * 12 11 9 34 34 H 1.08002 * 119.98896 * 179.97438 * 17 5 3 35 35 H 1.08004 * 120.00428 * 179.74665 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 1.4448 2.5021 0.0006 5 6 3.5805 1.1973 -0.0005 6 6 4.3335 2.5026 0.0000 7 6 4.4805 3.0060 1.4374 8 6 5.2445 4.3315 1.4379 9 6 5.3887 4.8277 2.8536 10 1 4.9763 4.2549 3.6712 11 6 6.0462 6.0132 3.1050 12 7 6.5480 6.7108 2.1095 13 14 6.2257 6.6278 4.8599 14 1 6.9734 5.6258 5.6613 15 1 6.9660 7.9151 4.8602 16 1 4.8796 6.8312 5.4531 17 6 4.2725 0.0002 -0.0016 18 6 3.5825 -1.1971 -0.0071 19 6 2.1987 -1.1980 -0.0005 20 17 1.3313 -2.7017 -0.0019 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.2624 2.8168 -1.0270 25 1 0.4927 2.3719 0.5150 26 1 2.0343 3.2618 0.5140 27 1 5.3216 2.3522 -0.4351 28 1 3.7855 3.2385 -0.5884 29 1 3.4925 3.1563 1.8725 30 1 5.0285 2.2701 2.0258 31 1 6.2325 4.1816 1.0027 32 1 4.6961 5.0673 0.8496 33 1 7.0102 7.5451 2.2863 34 1 5.3525 0.0010 -0.0024 35 1 4.1232 -2.1320 -0.0121 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066951.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:22 Heat of formation + Delta-G solvation = -20.001802 kcal Electronic energy + Delta-G solvation = -15803.753636 eV Core-core repulsion = 13212.022213 eV Total energy + Delta-G solvation = -2591.731423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.098 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.84876 -36.65805 -34.86970 -33.45420 -32.79758 -30.74832 -28.11707 -26.61783 -26.23744 -23.54424 -20.96873 -20.72890 -19.90250 -16.48471 -16.32077 -16.18029 -14.72734 -14.49417 -14.38161 -13.93603 -13.36318 -13.00944 -12.91124 -12.70386 -12.47883 -12.31118 -12.19562 -12.01825 -11.27697 -11.16544 -11.13910 -11.06615 -10.79458 -10.60933 -10.58500 -10.44383 -9.67639 -9.34413 -9.11778 -8.57866 -8.34425 -8.24720 -5.99737 -4.02104 1.25290 1.33921 2.14894 3.33468 3.37816 3.40520 3.65676 4.46294 4.72843 4.79481 5.00634 5.13182 5.28253 5.36036 5.47563 5.55182 5.55906 5.68278 5.77059 5.87313 5.90638 6.00385 6.05901 6.25083 6.30400 6.37553 6.43389 6.61370 6.87641 6.88822 6.94384 7.13726 7.67639 7.81707 8.00391 8.43169 9.04872 9.62037 11.11484 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.004006 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.277277 B = 6988.021474 C = 7086.159847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.078 4.078 3 C -0.073 4.073 4 C -0.124 4.124 5 C -0.056 4.056 6 C -0.087 4.087 7 C -0.103 4.103 8 C 0.021 3.979 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.046 4.046 20 Cl -0.082 7.082 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.131 0.869 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 -14.659 -6.395 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.073 4.073 4 C -0.181 4.181 5 C -0.056 4.056 6 C -0.124 4.124 7 C -0.141 4.141 8 C -0.016 4.016 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.072 4.072 20 Cl -0.054 7.054 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.267 -14.626 -6.433 18.993 hybrid contribution 0.205 0.140 0.966 0.997 sum -10.062 -14.487 -5.467 18.466 Atomic orbital electron populations 1.20904 0.90738 1.03356 1.02602 1.19542 0.96375 0.90965 1.01007 1.19592 0.93178 0.94430 1.00084 1.20992 1.00140 0.94387 1.02541 1.20178 0.93082 0.96201 0.96186 1.20841 0.99138 0.92195 1.00245 1.21640 1.00588 0.99627 0.92217 1.19114 0.95076 0.90437 0.96958 1.21228 1.35618 1.06068 0.93017 0.92801 1.25013 0.95612 0.96814 0.96945 1.69950 1.37661 1.15108 1.30837 0.86677 0.78235 0.78039 0.85170 1.20251 1.21286 1.20249 1.21030 1.00206 0.91098 1.00612 1.20944 0.91821 0.98962 1.01350 1.20670 0.92250 0.86037 1.08268 1.98327 1.77211 1.32703 1.97120 0.90971 0.91187 0.90702 0.91081 0.91281 0.89754 0.91242 0.90964 0.93128 0.93276 0.96596 0.96577 0.92964 0.85128 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.21 36.00 0.33 -0.91 16 2 C -0.08 -1.02 5.88 -104.59 -0.62 -1.63 16 3 C -0.07 -1.01 5.88 -104.63 -0.62 -1.63 16 4 C -0.12 -1.56 8.81 36.00 0.32 -1.24 16 5 C -0.06 -0.84 5.13 -104.62 -0.54 -1.38 16 6 C -0.09 -1.43 4.65 -27.88 -0.13 -1.56 16 7 C -0.10 -2.08 4.94 -26.73 -0.13 -2.21 16 8 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 10 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.11 -1.52 9.68 -39.59 -0.38 -1.91 16 18 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 19 C -0.05 -0.60 6.31 -39.49 -0.25 -0.85 16 20 Cl -0.08 -0.94 27.30 -51.86 -1.42 -2.36 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.70 6.91 -51.93 -0.36 0.34 16 23 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.75 5.95 -51.93 -0.31 0.44 16 26 H 0.08 1.20 5.43 -51.93 -0.28 0.92 16 27 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 28 H 0.07 1.16 6.99 -51.93 -0.36 0.80 16 29 H 0.05 1.01 6.91 -51.93 -0.36 0.65 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -29.70 300.37 -9.02 -38.72 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.90 Total: -3.20 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -2.95 Total: -28.23 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.42 Total: -2.36 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.70 -9.02 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066951.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.723 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds