Wall clock time and date at job start Sun Mar 29 2020 23:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38600 * 120.07669 * 2 1 4 4 C 1.38881 * 117.96929 * 179.75407 * 3 2 1 5 5 C 1.50703 * 121.01604 * 180.26416 * 4 3 2 6 6 S 1.81397 * 109.47450 * 270.26444 * 5 4 3 7 7 C 1.81396 * 103.00155 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47041 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46959 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99920 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99954 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00064 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99985 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47184 * 90.00021 * 13 11 9 15 15 H 1.48501 * 109.46988 * 210.00222 * 13 11 9 16 16 H 1.48500 * 109.46734 * 330.00070 * 13 11 9 17 17 C 1.38605 * 117.96740 * 0.52411 * 4 3 2 18 18 C 1.50706 * 120.07743 * 179.74368 * 17 4 3 19 19 N 1.31932 * 119.84809 * 359.46263 * 17 4 3 20 20 N 1.28345 * 122.17996 * 0.28141 * 19 17 4 21 21 H 1.08999 * 109.47098 * 269.97466 * 1 2 3 22 22 H 1.09000 * 109.47021 * 29.98240 * 1 2 3 23 23 H 1.08997 * 109.47015 * 149.97697 * 1 2 3 24 24 H 1.07999 * 121.01766 * 0.04145 * 3 2 1 25 25 H 1.09001 * 109.47353 * 30.26851 * 5 4 3 26 26 H 1.09001 * 109.46626 * 150.26618 * 5 4 3 27 27 H 1.08999 * 109.47268 * 300.00175 * 7 6 5 28 28 H 1.08999 * 109.47387 * 60.00103 * 7 6 5 29 29 H 1.08994 * 109.46962 * 300.00056 * 8 7 6 30 30 H 1.09001 * 109.47004 * 60.00426 * 8 7 6 31 31 H 0.96996 * 120.00128 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.46953 * 269.72107 * 18 17 4 33 33 H 1.09000 * 109.47318 * 29.71705 * 18 17 4 34 34 H 1.09000 * 109.47161 * 149.72335 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5895 1.1483 0.0053 5 6 4.4130 2.4104 0.0116 6 16 4.7435 2.9254 -1.6961 7 6 5.7290 4.4335 -1.4841 8 6 6.0954 5.0005 -2.8571 9 6 6.9137 6.2538 -2.6809 10 1 7.1492 6.6099 -1.6889 11 6 7.3616 6.9456 -3.7862 12 7 8.0761 8.0390 -3.6325 13 14 6.9536 6.3300 -5.5020 14 1 5.6732 6.9323 -5.9526 15 1 8.0394 6.7174 -6.4381 16 1 6.8239 4.8509 -5.4793 17 6 4.1941 -0.0989 -0.0010 18 6 5.6971 -0.2097 -0.0015 19 7 3.4508 -1.1889 -0.0009 20 7 2.1683 -1.1417 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6796 2.1448 0.0007 25 1 3.8662 3.1985 0.5294 26 1 5.3569 2.2258 0.5245 27 1 5.1497 5.1711 -0.9287 28 1 6.6400 4.1979 -0.9338 29 1 6.6749 4.2628 -3.4120 30 1 5.1847 5.2361 -3.4077 31 1 8.3909 8.5260 -4.4100 32 1 6.0591 -0.2362 -1.0293 33 1 6.1251 0.6511 0.5123 34 1 5.9942 -1.1241 0.5120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262160245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:48 Heat of formation + Delta-G solvation = 32.733655 kcal Electronic energy + Delta-G solvation = -15370.586569 eV Core-core repulsion = 12815.478384 eV Total energy + Delta-G solvation = -2555.108184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29402 -35.30573 -34.32760 -33.79957 -31.32430 -30.35810 -28.38731 -26.82421 -25.62358 -23.54794 -21.92357 -20.72804 -17.93281 -17.07279 -16.18203 -15.99268 -15.41058 -15.00269 -14.43329 -14.33135 -13.82839 -13.56770 -13.51009 -13.14080 -12.94721 -12.78782 -12.59646 -12.51522 -12.28366 -11.82692 -11.24637 -10.96652 -10.52934 -10.39143 -10.15447 -9.84553 -9.76304 -9.64495 -9.41538 -9.27482 -8.66044 -7.46005 -6.16854 -4.17596 0.46561 0.74577 2.00194 2.89187 3.25144 3.33023 3.37578 3.40902 3.81125 4.11149 4.23258 4.35560 4.36953 4.60012 4.87709 4.94662 5.17085 5.21627 5.23748 5.25425 5.38634 5.51372 5.58390 5.67408 5.75247 5.84979 5.87102 5.99672 6.15249 6.41780 7.01476 7.13722 7.58430 8.35607 8.60454 8.84160 9.43567 10.95760 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.036963 B = 0.004086 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.328070 B = 6850.536423 C = 7061.296846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.061 3.939 3 C -0.103 4.103 4 C -0.058 4.058 5 C -0.057 4.057 6 S -0.271 6.271 7 C -0.052 4.052 8 C 0.003 3.997 9 C -0.523 4.523 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.264 1.264 17 C 0.080 3.920 18 C -0.104 4.104 19 N -0.242 5.242 20 N -0.246 5.246 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.151 0.849 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.022 0.978 31 H 0.266 0.734 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 -13.846 8.771 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 C -0.134 4.134 4 C -0.070 4.070 5 C -0.205 4.205 6 S -0.042 6.042 7 C -0.200 4.200 8 C -0.036 4.036 9 C -0.562 4.562 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.188 1.188 17 C -0.066 4.066 18 C -0.162 4.162 19 N -0.083 5.083 20 N -0.089 5.089 21 H 0.100 0.900 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.169 0.831 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.631 -15.852 7.741 21.130 hybrid contribution 0.287 2.123 0.175 2.149 sum -11.344 -13.729 7.916 19.489 Atomic orbital electron populations 1.20659 0.87440 1.04113 1.03472 1.22840 0.99056 0.90237 0.96185 1.22195 0.93692 1.00166 0.97327 1.20393 0.94257 0.95123 0.97248 1.22271 1.02523 0.96397 0.99297 1.87153 1.72060 1.36760 1.08199 1.23551 0.99264 0.92505 1.04687 1.19370 0.97102 0.96750 0.90382 1.20931 1.33037 1.07082 0.95190 0.90779 1.24955 0.94320 0.94495 0.99243 1.69889 1.36143 1.16912 1.30679 0.86796 0.78352 0.80081 0.84292 1.20058 1.21108 1.18813 1.22765 0.99242 0.89561 0.95064 1.20756 0.87279 1.03727 1.04436 1.72943 0.99335 1.26488 1.09571 1.72872 1.01547 1.24883 1.09553 0.89982 0.90177 0.89984 0.83092 0.88623 0.88168 0.90555 0.90462 0.95501 0.96011 0.92448 0.88989 0.90111 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.20 36.01 0.37 -0.37 16 2 C 0.06 0.70 6.86 -82.41 -0.57 0.13 16 3 C -0.10 -1.13 9.60 -39.21 -0.38 -1.51 16 4 C -0.06 -0.71 5.19 -104.25 -0.54 -1.25 16 5 C -0.06 -0.68 5.74 36.01 0.21 -0.47 16 6 S -0.27 -4.36 21.72 -107.50 -2.33 -6.70 16 7 C -0.05 -0.97 5.88 37.16 0.22 -0.75 16 8 C 0.00 0.07 4.05 -27.88 -0.11 -0.04 16 9 C -0.52 -14.34 9.66 -34.44 -0.33 -14.67 16 10 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -26.93 13.96 55.43 0.77 -26.16 16 13 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 17 C 0.08 1.03 6.86 -82.41 -0.57 0.46 16 18 C -0.10 -1.08 9.83 36.01 0.35 -0.73 16 19 N -0.24 -3.54 11.43 33.60 0.38 -3.16 16 20 N -0.25 -3.47 11.43 33.59 0.38 -3.09 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.10 1.00 8.11 -51.92 -0.42 0.58 16 26 H 0.10 1.05 6.07 -51.92 -0.32 0.74 16 27 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 28 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 29 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 30 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.73 6.05 -51.93 -0.31 0.42 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -31.56 302.39 -7.13 -38.70 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.78 Total: -3.54 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.45 Total: -17.24 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 1.54 Total: -32.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.33 Total: -6.70 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.56 -7.13 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262160245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.432 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds