Wall clock time and date at job start Sun Mar 29 2020 23:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37753 * 120.01902 * 2 1 4 4 C 1.38590 * 120.37119 * 180.02562 * 3 2 1 5 5 C 1.38140 * 120.39531 * 0.29729 * 4 3 2 6 6 F 1.35095 * 119.98537 * 179.69822 * 5 4 3 7 7 C 1.39118 * 120.02240 * 359.45231 * 5 4 3 8 8 N 1.39030 * 120.17962 * 180.24849 * 7 5 4 9 9 C 1.39751 * 120.01785 * 180.02562 * 2 1 3 10 10 C 1.47436 * 120.19412 * 359.97438 * 9 2 1 11 11 O 1.21602 * 120.00425 * 90.00446 * 10 9 2 12 12 N 1.34777 * 119.99954 * 269.99593 * 10 9 2 13 13 C 1.46507 * 120.00153 * 179.97438 * 12 10 9 14 14 C 1.50691 * 109.47008 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99715 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99930 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46986 * 59.99371 * 18 16 14 20 20 H 1.48497 * 109.47185 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46727 * 299.99703 * 18 16 14 22 22 H 1.08999 * 109.47303 * 90.00015 * 1 2 3 23 23 H 1.08995 * 109.47004 * 209.99900 * 1 2 3 24 24 H 1.09000 * 109.47435 * 330.00012 * 1 2 3 25 25 H 1.08004 * 119.81301 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.79941 * 180.02562 * 4 3 2 27 27 H 0.97001 * 120.00205 * 180.27443 * 8 7 5 28 28 H 0.97001 * 119.99988 * 0.27740 * 8 7 5 29 29 H 0.96996 * 119.99731 * 0.02562 * 12 10 9 30 30 H 1.08997 * 109.46975 * 300.00654 * 13 12 10 31 31 H 1.09006 * 109.46257 * 60.00523 * 13 12 10 32 32 H 0.97004 * 119.99451 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1927 0.0000 4 6 3.5820 1.2013 -0.0005 5 6 4.2882 0.0141 -0.0073 6 9 5.6390 0.0321 -0.0139 7 6 3.6089 -1.2000 -0.0020 8 7 4.3165 -2.3968 -0.0036 9 6 2.2061 -1.2101 -0.0005 10 6 1.4736 -2.4896 -0.0005 11 8 1.1712 -3.0172 -1.0536 12 7 1.1394 -3.0748 1.1667 13 6 0.4110 -4.3460 1.1667 14 6 0.1617 -4.7819 2.5875 15 1 0.5105 -4.1729 3.4083 16 6 -0.5116 -5.9585 2.8394 17 7 -0.9367 -6.6998 1.8398 18 14 -0.8214 -6.4986 4.6007 19 1 -1.6279 -5.4666 5.3003 20 1 -1.5595 -7.7872 4.6007 21 1 0.4767 -6.6712 5.3009 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6534 2.1265 0.0004 26 1 4.1129 2.1418 -0.0001 27 1 3.8402 -3.2418 -0.0039 28 1 5.2865 -2.3868 -0.0042 29 1 1.3804 -2.6538 2.0067 30 1 -0.5420 -4.2186 0.6535 31 1 1.0025 -5.1034 0.6523 32 1 -1.4108 -7.5274 2.0172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297149030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:40 Heat of formation + Delta-G solvation = -94.875320 kcal Electronic energy + Delta-G solvation = -18052.904966 eV Core-core repulsion = 14926.050065 eV Total energy + Delta-G solvation = -3126.854901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.80033 -41.34816 -39.26837 -36.17660 -36.06901 -34.39034 -33.10567 -30.59042 -29.13742 -27.62767 -25.48912 -23.91520 -22.44512 -21.51302 -19.56644 -18.79694 -18.16373 -17.64649 -17.20423 -16.87764 -16.57845 -16.23572 -15.98629 -15.78993 -15.12038 -14.70371 -14.54475 -14.40139 -14.02979 -13.76817 -13.35194 -12.99476 -12.95978 -12.72539 -12.66458 -12.57652 -12.25693 -11.60096 -11.53907 -10.94521 -10.81290 -9.92245 -9.70621 -8.63507 -8.30232 -6.46839 0.01917 0.38983 1.42852 1.46134 1.53991 1.54596 2.27072 2.45311 2.59538 2.66362 3.04705 3.31871 3.68439 3.87261 4.00079 4.27565 4.40379 4.67390 4.73879 4.87660 4.91787 5.07519 5.19663 5.21235 5.29052 5.41756 5.51866 5.62073 5.79174 5.81863 6.20561 6.57776 6.61921 6.78906 7.19510 7.35413 8.81397 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.028877 B = 0.005233 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.405304 B = 5349.267006 C = 5616.418870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.015 4.015 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.008 4.008 6 F -0.144 7.144 7 C 0.217 3.783 8 N -0.861 5.861 9 C -0.207 4.207 10 C 0.560 3.440 11 O -0.593 6.593 12 N -0.694 5.694 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.081 0.919 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.284 1.284 21 H -0.264 1.264 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.109 0.891 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.400 0.600 28 H 0.413 0.587 29 H 0.406 0.594 30 H -0.008 1.008 31 H -0.007 1.007 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 17.106 0.294 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.017 4.017 3 C -0.165 4.165 4 C -0.092 4.092 5 C -0.032 4.032 6 F -0.123 7.123 7 C 0.108 3.892 8 N -0.399 5.399 9 C -0.216 4.216 10 C 0.347 3.653 11 O -0.475 6.475 12 N -0.342 5.342 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.188 1.188 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.128 0.872 25 H 0.190 0.810 26 H 0.189 0.811 27 H 0.228 0.772 28 H 0.244 0.756 29 H 0.241 0.759 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.269 16.542 -0.472 18.500 hybrid contribution 0.238 -1.296 0.720 1.502 sum 8.507 15.246 0.248 17.461 Atomic orbital electron populations 1.20939 0.90050 1.03746 1.03200 1.19976 0.96678 0.91078 0.93944 1.20909 0.92910 0.97768 1.04915 1.21397 0.94793 0.96882 0.96103 1.17078 0.76932 0.92942 1.16204 1.91427 1.28551 1.97189 1.95176 1.17706 0.89949 0.86992 0.94576 1.42312 1.09875 1.04900 1.82774 1.19094 0.91321 0.93601 1.17552 1.18489 0.78778 0.84464 0.83603 1.90748 1.57254 1.66438 1.33030 1.46317 1.55938 1.23949 1.07981 1.18621 0.89840 0.80138 0.97014 1.21536 1.38358 1.07781 0.91799 0.90127 1.26002 0.94504 0.96022 1.02664 1.70119 1.38192 1.14571 1.33805 0.85245 0.78791 0.77548 0.77880 1.18697 1.20992 1.18846 0.90468 0.93803 0.87239 0.81024 0.81080 0.77166 0.75646 0.75919 0.99020 0.98920 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 9.62 71.23 0.69 -2.39 16 2 C -0.02 -0.41 5.91 -19.61 -0.12 -0.52 16 3 C -0.15 -2.73 9.67 22.24 0.22 -2.52 16 4 C -0.07 -1.36 10.00 22.33 0.22 -1.14 16 5 C -0.01 -0.19 7.30 22.46 0.16 -0.03 16 6 F -0.14 -3.50 16.63 44.97 0.75 -2.75 16 7 C 0.22 6.44 6.77 38.71 0.26 6.70 16 8 N -0.86 -24.29 8.99 -50.79 -0.46 -24.75 16 9 C -0.21 -6.84 5.64 -19.99 -0.11 -6.95 16 10 C 0.56 23.58 4.46 86.67 0.39 23.96 16 11 O -0.59 -30.39 17.11 -4.04 -0.07 -30.45 16 12 N -0.69 -29.96 5.55 -470.09 -2.61 -32.57 16 13 C 0.27 14.47 5.43 85.63 0.46 14.93 16 14 C -0.56 -30.04 9.28 25.60 0.24 -29.81 16 15 H 0.08 3.97 7.60 -2.91 -0.02 3.95 16 16 C 0.01 0.44 5.46 84.66 0.46 0.91 16 17 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 18 Si 0.98 41.95 29.54 68.60 2.03 43.97 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.37 7.08 -2.39 -0.02 1.35 16 24 H 0.11 1.88 8.08 -2.39 -0.02 1.86 16 25 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 26 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 27 H 0.40 12.75 7.68 -92.71 -0.71 12.04 16 28 H 0.41 9.47 8.31 -92.71 -0.77 8.70 16 29 H 0.41 15.34 8.31 -92.71 -0.77 14.57 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.95 287.87 1.73 -68.22 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -1.07 Total: 30.22 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 2.87 Total: 3.14 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -2.78 Total: -112.34 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.07 Total: -30.45 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.75 Total: -2.75 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -69.95 1.73 -68.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297149030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.660 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds