Wall clock time and date at job start Sun Mar 29 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48498 * 109.46656 * 154.98535 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47257 * 179.97438 * 12 11 9 14 14 N 1.30956 * 126.49079 * 90.01750 * 13 12 11 15 15 N 1.29023 * 109.76707 * 179.97438 * 14 13 12 16 16 C 1.29527 * 109.45588 * 359.97438 * 15 14 13 17 17 N 1.34319 * 126.48746 * 269.71468 * 13 12 11 18 18 C 1.46325 * 130.08573 * 0.14281 * 17 13 12 19 19 C 1.53521 * 108.05262 * 163.72417 * 18 17 13 20 20 O 1.43019 * 109.76190 * 48.20449 * 19 18 17 21 21 C 1.43722 * 113.91354 * 289.70566 * 20 19 18 22 22 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 24 24 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 25 25 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 26 26 H 1.08995 * 109.74703 * 283.36402 * 18 17 13 27 27 H 1.09001 * 109.74232 * 44.03722 * 18 17 13 28 28 H 1.08999 * 109.42534 * 168.29875 * 19 18 17 29 29 H 1.08999 * 109.42526 * 288.17701 * 19 18 17 30 30 H 1.08998 * 110.37564 * 290.05067 * 21 20 19 31 31 H 1.09003 * 109.31462 * 169.11701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5869 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2199 -6.0331 -0.5182 14 7 2.7275 -6.7321 0.4660 15 7 3.5352 -7.6226 -0.0024 16 6 3.5765 -7.5309 -1.2937 17 7 2.7390 -6.5221 -1.6564 18 6 2.5152 -6.1168 -3.0445 19 6 3.6408 -6.7131 -3.9015 20 8 3.8020 -8.0999 -3.5913 21 6 4.3626 -8.3446 -2.2907 22 1 -0.4850 0.8400 0.0004 23 1 2.9311 -3.6293 -0.2590 24 1 0.6073 -5.0546 0.4804 25 1 0.6098 -4.8644 -1.2894 26 1 1.5519 -6.4941 -3.3876 27 1 2.5321 -5.0294 -3.1179 28 1 3.3895 -6.6044 -4.9566 29 1 4.5721 -6.1857 -3.6947 30 1 5.4106 -8.0459 -2.2669 31 1 4.2745 -9.4049 -2.0538 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297303848.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:18 Heat of formation + Delta-G solvation = 3.331148 kcal Electronic energy + Delta-G solvation = -18207.360609 eV Core-core repulsion = 15104.684222 eV Total energy + Delta-G solvation = -3102.676387 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.35302 -38.88961 -37.44374 -35.00483 -33.66790 -32.46209 -31.42246 -30.31128 -27.65332 -26.39088 -25.14292 -24.26461 -21.34994 -20.37507 -19.83721 -17.92920 -17.40649 -16.93386 -16.10642 -15.70350 -15.52586 -15.30354 -14.64632 -14.40574 -14.06563 -13.58673 -13.51893 -12.95443 -12.44520 -12.25504 -11.77306 -11.64446 -11.41074 -11.24523 -11.02763 -10.56565 -10.56185 -10.37277 -10.29818 -10.17220 -9.16023 -8.93767 -7.75816 -7.75184 -6.29567 -4.74364 1.69546 2.26237 2.80476 3.08363 3.16454 3.20230 3.23464 3.85914 4.01631 4.05564 4.34543 4.47127 4.53068 4.69873 4.88302 4.89440 4.98255 5.09597 5.19760 5.24971 5.63102 5.73996 5.95140 6.13622 6.22635 6.38538 6.76393 7.35135 7.70674 7.87341 8.20683 8.71758 8.92834 9.33660 10.46571 10.64648 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.004912 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.880316 B = 5699.211541 C = 5952.159427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.762 5.762 12 C 0.218 3.782 13 C 0.195 3.805 14 N -0.286 5.286 15 N -0.278 5.278 16 C 0.122 3.878 17 N -0.463 5.463 18 C 0.068 3.932 19 C 0.048 3.952 20 O -0.371 6.371 21 C 0.154 3.846 22 H 0.270 0.730 23 H 0.382 0.618 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 -11.343 -9.784 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.420 5.420 12 C 0.091 3.909 13 C -0.073 4.073 14 N -0.127 5.127 15 N -0.119 5.119 16 C -0.147 4.147 17 N -0.156 5.156 18 C -0.056 4.056 19 C -0.030 4.030 20 O -0.288 6.288 21 C 0.075 3.925 22 H 0.081 0.919 23 H 0.214 0.786 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.142 0.858 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.513 -11.856 -8.534 16.428 hybrid contribution 0.636 1.469 -1.070 1.925 sum 8.150 -10.387 -9.604 16.327 Atomic orbital electron populations 1.70017 1.07098 1.27495 1.34760 1.25701 0.94624 1.00339 0.92530 0.86326 0.80284 0.81307 0.78685 1.19787 1.20320 1.18837 1.20838 0.94175 0.89249 1.53725 0.91286 1.18269 0.87151 0.81951 0.76501 1.90619 1.13939 1.86072 1.55364 1.46250 1.08766 1.04513 1.82451 1.19201 0.89519 0.79225 1.02989 1.25083 1.00561 1.00254 0.81377 1.74675 1.09105 1.04638 1.24290 1.73941 1.15469 1.17321 1.05133 1.25359 0.99228 0.94998 0.95070 1.45947 1.34054 1.26929 1.08654 1.22833 1.01980 1.03211 0.77542 1.23045 0.97242 0.82281 1.00399 1.88227 1.83951 1.24026 1.32592 1.21249 0.94597 0.99420 0.77254 0.91945 0.78625 0.89370 0.91291 0.88140 0.86846 0.85827 0.91242 0.89214 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.35 11.85 55.55 0.66 -21.69 16 2 C 0.09 2.40 5.49 -17.37 -0.10 2.30 16 3 Si 0.91 19.63 29.56 -169.99 -5.03 14.60 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.54 -14.95 9.53 -35.63 -0.34 -15.29 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.34 7.74 -12.98 -0.10 15.24 16 10 O -0.58 -18.07 15.05 5.20 0.08 -17.99 16 11 N -0.76 -16.70 5.54 -62.90 -0.35 -17.05 16 12 C 0.22 4.18 6.11 -5.20 -0.03 4.15 16 13 C 0.19 3.39 7.46 -155.69 -1.16 2.23 16 14 N -0.29 -5.52 12.24 32.65 0.40 -5.12 16 15 N -0.28 -4.85 12.20 32.77 0.40 -4.45 16 16 C 0.12 1.70 7.90 -155.26 -1.23 0.48 16 17 N -0.46 -6.56 3.12 -110.76 -0.35 -6.90 16 18 C 0.07 0.68 7.14 -3.87 -0.03 0.65 16 19 C 0.05 0.36 6.81 37.43 0.26 0.62 16 20 O -0.37 -3.48 10.80 -35.23 -0.38 -3.86 16 21 C 0.15 1.43 7.29 36.05 0.26 1.69 16 22 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 23 H 0.38 7.73 8.44 -40.82 -0.34 7.39 16 24 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 25 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.12 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 276.78 15.07 4.17 4.17 Total: -1.00 -36.09 276.78 -6.13 -42.22 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.27 Total: 4.02 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -2.46 Total: 12.06 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.76 Total: -55.22 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.30 Total: -21.85 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -36.09 -6.13 -42.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297303848.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.547 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds