Wall clock time and date at job start Sun Mar 29 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48498 * 109.46656 * 154.98535 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47257 * 179.97438 * 12 11 9 14 14 N 1.30956 * 126.49079 * 90.01750 * 13 12 11 15 15 N 1.29023 * 109.76707 * 179.97438 * 14 13 12 16 16 C 1.29527 * 109.45588 * 359.97438 * 15 14 13 17 17 N 1.34319 * 126.48746 * 269.71468 * 13 12 11 18 18 C 1.46325 * 130.08573 * 0.14281 * 17 13 12 19 19 C 1.53521 * 108.05262 * 163.72417 * 18 17 13 20 20 O 1.43019 * 109.76190 * 48.20449 * 19 18 17 21 21 C 1.43722 * 113.91354 * 289.70566 * 20 19 18 22 22 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 24 24 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 25 25 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 26 26 H 1.08995 * 109.74703 * 283.36402 * 18 17 13 27 27 H 1.09001 * 109.74232 * 44.03722 * 18 17 13 28 28 H 1.08999 * 109.42534 * 168.29875 * 19 18 17 29 29 H 1.08999 * 109.42526 * 288.17701 * 19 18 17 30 30 H 1.08998 * 110.37564 * 290.05067 * 21 20 19 31 31 H 1.09003 * 109.31462 * 169.11701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5869 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2199 -6.0331 -0.5182 14 7 2.7275 -6.7321 0.4660 15 7 3.5352 -7.6226 -0.0024 16 6 3.5765 -7.5309 -1.2937 17 7 2.7390 -6.5221 -1.6564 18 6 2.5152 -6.1168 -3.0445 19 6 3.6408 -6.7131 -3.9015 20 8 3.8020 -8.0999 -3.5913 21 6 4.3626 -8.3446 -2.2907 22 1 -0.4850 0.8400 0.0004 23 1 2.9311 -3.6293 -0.2590 24 1 0.6073 -5.0546 0.4804 25 1 0.6098 -4.8644 -1.2894 26 1 1.5519 -6.4941 -3.3876 27 1 2.5321 -5.0294 -3.1179 28 1 3.3895 -6.6044 -4.9566 29 1 4.5721 -6.1857 -3.6947 30 1 5.4106 -8.0459 -2.2669 31 1 4.2745 -9.4049 -2.0538 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297303848.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:18 Heat of formation + Delta-G solvation = -24.892138 kcal Electronic energy + Delta-G solvation = -18208.584462 eV Core-core repulsion = 15104.684222 eV Total energy + Delta-G solvation = -3103.900241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.56209 -39.68872 -39.46085 -36.23899 -35.32307 -34.52365 -32.65585 -31.38716 -29.28179 -27.72316 -26.70487 -25.17013 -22.67626 -21.85194 -21.33244 -19.55611 -18.56826 -18.04961 -17.50056 -17.16242 -16.62048 -16.27459 -16.15483 -15.90257 -15.58468 -14.98491 -14.72393 -14.35814 -13.98393 -13.61830 -13.28321 -13.10318 -12.77752 -12.66017 -12.63473 -12.39408 -12.02509 -11.65137 -11.41693 -11.15060 -10.95348 -10.45424 -9.90578 -9.69902 -8.34094 -6.90157 0.48550 1.20231 1.40676 1.41381 1.51937 1.58243 2.23959 2.41846 2.56640 2.80944 3.02029 3.17862 3.31916 3.51172 3.74290 3.87972 3.98428 4.22954 4.33903 4.44323 4.50135 4.59223 4.69505 4.73356 4.89119 5.29677 5.59361 5.75845 5.78345 5.94666 6.17220 6.83123 7.36121 7.45030 8.38572 8.61151 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.004912 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.880316 B = 5699.211541 C = 5952.159427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.998 3.002 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.086 0.914 9 C 0.544 3.456 10 O -0.625 6.625 11 N -0.748 5.748 12 C 0.228 3.772 13 C 0.183 3.817 14 N -0.321 5.321 15 N -0.314 5.314 16 C 0.141 3.859 17 N -0.460 5.460 18 C 0.056 3.944 19 C 0.051 3.949 20 O -0.376 6.376 21 C 0.155 3.845 22 H 0.277 0.723 23 H 0.392 0.608 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -11.221 -11.575 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.183 4.183 3 Si 0.817 3.183 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.607 4.607 8 H 0.104 0.896 9 C 0.349 3.651 10 O -0.511 6.511 11 N -0.404 5.404 12 C 0.102 3.898 13 C -0.085 4.085 14 N -0.162 5.162 15 N -0.154 5.154 16 C -0.129 4.129 17 N -0.151 5.151 18 C -0.065 4.065 19 C -0.026 4.026 20 O -0.292 6.292 21 C 0.076 3.924 22 H 0.087 0.913 23 H 0.225 0.775 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.174 0.826 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.750 -11.781 -10.351 18.466 hybrid contribution -0.033 1.316 -0.567 1.433 sum 9.717 -10.465 -10.918 17.976 Atomic orbital electron populations 1.70165 1.09466 1.29204 1.35779 1.26924 0.95489 1.04779 0.91105 0.84998 0.78776 0.75150 0.79338 1.18386 1.19778 1.17541 1.21351 0.95168 0.89983 1.54172 0.89631 1.18565 0.86758 0.83551 0.76204 1.90577 1.15860 1.87159 1.57542 1.45832 1.09103 1.04417 1.81041 1.18987 0.89718 0.78742 1.02398 1.24465 1.01164 1.00249 0.82670 1.74570 1.10115 1.05647 1.25910 1.73856 1.16466 1.17950 1.07139 1.26301 0.97694 0.93989 0.94885 1.46141 1.33222 1.26449 1.09326 1.23257 1.03946 1.03648 0.75674 1.23259 0.96574 0.81326 1.01422 1.88241 1.83952 1.25000 1.32029 1.21656 0.95020 0.99743 0.75987 0.91321 0.77491 0.91424 0.90527 0.87151 0.86864 0.82560 0.90201 0.86409 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.62 11.85 21.83 0.26 -48.36 16 2 C 0.03 1.78 5.49 85.30 0.47 2.25 16 3 Si 1.00 39.71 29.56 68.60 2.03 41.74 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 7 C -0.57 -31.55 9.53 24.83 0.24 -31.32 16 8 H 0.09 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.54 30.74 7.74 86.36 0.67 31.40 16 10 O -0.62 -40.56 15.05 -4.31 -0.06 -40.63 16 11 N -0.75 -33.40 5.54 -471.14 -2.61 -36.01 16 12 C 0.23 9.03 6.11 85.63 0.52 9.56 16 13 C 0.18 6.43 7.46 138.22 1.03 7.46 16 14 N -0.32 -12.60 12.24 -50.63 -0.62 -13.22 16 15 N -0.31 -10.84 12.20 -50.24 -0.61 -11.45 16 16 C 0.14 3.70 7.90 138.12 1.09 4.79 16 17 N -0.46 -12.48 3.12 -504.33 -1.57 -14.05 16 18 C 0.06 1.02 7.14 86.59 0.62 1.64 16 19 C 0.05 0.59 6.81 72.16 0.49 1.08 16 20 O -0.38 -5.64 10.80 -148.98 -1.61 -7.25 16 21 C 0.15 2.36 7.29 71.27 0.52 2.88 16 22 H 0.28 14.85 8.29 -92.71 -0.77 14.08 16 23 H 0.39 15.93 8.44 -92.71 -0.78 15.15 16 24 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -80.61 276.78 1.23 -79.38 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.39 Total: 20.10 kcal Atomic # 6 Polarization: 24.10 SS G_CDS: 5.65 Total: 29.74 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.16 Total: -123.08 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -1.67 Total: -47.87 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -80.61 1.23 -79.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297303848.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.484 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds