Wall clock time and date at job start Sun Mar 29 2020 22:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30454 * 125.98534 * 2 1 4 4 N 1.39936 * 108.89484 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.74996 * 179.97438 * 4 3 2 6 6 C 1.34260 * 108.49307 * 0.23337 * 4 3 2 7 7 C 1.38045 * 107.41631 * 359.63805 * 6 4 3 8 8 C 1.47426 * 126.41703 * 180.10980 * 7 6 4 9 9 O 1.21597 * 120.00527 * 180.29953 * 8 7 6 10 10 N 1.34780 * 119.99934 * 0.29679 * 8 7 6 11 11 C 1.46494 * 120.00332 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47466 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99732 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00436 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00583 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99624 * 0.02562 * 15 14 12 17 17 C 1.38940 * 120.00287 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99869 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00117 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46960 * 90.00360 * 19 17 15 21 21 H 1.48498 * 109.47171 * 210.00135 * 19 17 15 22 22 H 1.48494 * 109.47285 * 330.00449 * 19 17 15 23 23 H 1.09005 * 109.47296 * 90.02044 * 1 2 3 24 24 H 1.09003 * 109.47048 * 210.02233 * 1 2 3 25 25 H 1.08996 * 109.47509 * 330.02073 * 1 2 3 26 26 H 1.08000 * 126.29430 * 179.75064 * 6 4 3 27 27 H 0.97006 * 119.99550 * 359.97438 * 10 8 7 28 28 H 1.09008 * 109.46950 * 299.99653 * 11 10 8 29 29 H 1.08999 * 109.47443 * 59.99467 * 11 10 8 30 30 H 0.97010 * 119.99474 * 0.02562 * 14 12 11 31 31 H 0.96999 * 119.99828 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6443 0.0006 5 1 4.3841 1.2303 0.0004 6 6 3.6439 -0.6978 -0.0042 7 6 2.3373 -1.1432 0.0004 8 6 1.8916 -2.5484 -0.0001 9 8 0.7040 -2.8097 -0.0011 10 7 2.8005 -3.5437 0.0006 11 6 2.3577 -4.9401 -0.0005 12 6 3.5602 -5.8485 -0.0001 13 8 4.6772 -5.3758 0.0014 14 7 3.3944 -7.1860 -0.0004 15 6 4.4883 -8.0124 0.0004 16 1 5.4829 -7.5915 0.0018 17 6 4.3174 -9.3912 -0.0004 18 7 5.3660 -10.1833 -0.0001 19 14 2.5971 -10.1191 -0.0020 20 1 2.1422 -10.3113 -1.4025 21 1 2.6132 -11.4290 0.6974 22 1 1.6682 -9.1958 0.6977 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8901 0.5135 26 1 4.5298 -1.3156 -0.0089 27 1 3.7479 -3.3352 0.0010 28 1 1.7571 -5.1315 0.8889 29 1 1.7590 -5.1308 -0.8911 30 1 2.5010 -7.5640 -0.0013 31 1 5.2467 -11.1459 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323224889.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:34 Heat of formation + Delta-G solvation = -1.621612 kcal Electronic energy + Delta-G solvation = -17579.434828 eV Core-core repulsion = 14476.543673 eV Total energy + Delta-G solvation = -3102.891155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.52032 -39.26530 -38.12910 -34.56142 -33.81070 -33.01920 -31.83082 -30.72194 -28.23225 -27.50059 -24.50900 -22.89412 -20.49581 -19.88342 -19.58541 -18.92320 -18.14686 -16.63669 -15.61473 -15.57994 -15.29901 -14.90733 -14.77336 -14.37189 -13.77734 -13.69332 -13.13162 -13.01177 -12.88363 -12.51999 -12.19176 -12.10961 -12.05502 -11.24655 -11.08766 -10.65344 -10.08161 -9.77750 -9.71505 -9.65958 -9.06527 -8.79376 -8.74065 -8.32225 -6.42559 -3.95273 1.37725 2.05703 2.52220 2.98805 3.03541 3.11685 3.38594 3.48960 3.58638 4.02364 4.38276 4.51314 4.56647 5.02972 5.12686 5.26951 5.33228 5.62748 5.67405 5.75323 5.82639 5.83017 5.91547 6.37385 6.59733 6.90230 7.35366 7.42782 7.80080 7.98726 8.39822 8.47866 8.79784 9.28088 9.61482 10.69577 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.045906 B = 0.004186 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.793967 B = 6688.006005 C = 7277.352807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.135 3.865 3 N -0.305 5.305 4 N -0.463 5.463 5 H 0.444 0.556 6 C 0.110 3.890 7 C -0.285 4.285 8 C 0.592 3.408 9 O -0.549 6.549 10 N -0.707 5.707 11 C 0.108 3.892 12 C 0.438 3.562 13 O -0.581 6.581 14 N -0.576 5.576 15 C -0.311 4.311 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.266 1.266 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.190 0.810 27 H 0.408 0.592 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.375 0.625 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 16.429 -0.012 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.128 5.128 4 N -0.167 5.167 5 H 0.288 0.712 6 C -0.043 4.043 7 C -0.300 4.300 8 C 0.380 3.620 9 O -0.429 6.429 10 N -0.361 5.361 11 C -0.019 4.019 12 C 0.224 3.776 13 O -0.466 6.466 14 N -0.213 5.213 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.513 5.513 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.207 0.793 27 H 0.246 0.754 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.208 0.792 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.673 17.554 -0.008 18.779 hybrid contribution -0.127 -1.358 -0.011 1.364 sum -6.800 16.195 -0.019 17.565 Atomic orbital electron populations 1.20356 0.85622 1.04079 1.03613 1.22489 0.97396 0.88644 0.94791 1.77146 0.86300 1.22483 1.26899 1.46083 1.07798 1.05500 1.57317 0.71174 1.23311 0.99371 0.85597 0.96053 1.20288 0.92157 0.94542 1.23010 1.17172 0.85489 0.83419 0.75968 1.90718 1.16303 1.84318 1.51520 1.45515 1.10682 1.04991 1.74902 1.20956 0.96299 0.81239 1.03440 1.19659 0.89876 0.83091 0.84957 1.90522 1.25432 1.74795 1.55854 1.42126 1.08662 1.05213 1.65324 1.19436 0.88465 0.87306 1.48720 0.86100 1.25065 0.97899 0.95830 0.97085 1.69618 1.29104 1.04474 1.48130 0.86667 0.83710 0.79949 0.79165 1.19370 1.19986 1.19172 0.90169 0.88433 0.91139 0.79306 0.75428 0.89620 0.89622 0.79199 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.92 36.00 0.36 -0.51 16 2 C 0.13 1.74 7.26 -82.02 -0.60 1.14 16 3 N -0.31 -3.73 12.63 33.90 0.43 -3.30 16 4 N -0.46 -4.21 7.29 30.85 0.22 -3.99 16 5 H 0.44 2.35 8.96 -182.72 -1.64 0.71 16 6 C 0.11 1.08 11.52 -16.56 -0.19 0.89 16 7 C -0.29 -3.74 6.13 -105.07 -0.64 -4.38 16 8 C 0.59 9.13 7.81 -12.52 -0.10 9.03 16 9 O -0.55 -9.68 14.92 5.28 0.08 -9.60 16 10 N -0.71 -10.95 5.52 -62.57 -0.35 -11.30 16 11 C 0.11 1.82 6.15 -5.20 -0.03 1.79 16 12 C 0.44 9.36 7.85 -10.99 -0.09 9.28 16 13 O -0.58 -14.18 15.24 5.55 0.08 -14.09 16 14 N -0.58 -13.12 5.09 -10.97 -0.06 -13.17 16 15 C -0.31 -8.43 10.16 -14.94 -0.15 -8.58 16 16 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 17 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -24.70 13.96 55.50 0.77 -23.92 16 19 Si 0.88 18.74 27.74 -169.99 -4.71 14.03 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.10 1.19 6.56 -51.93 -0.34 0.85 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.19 1.30 7.46 -52.49 -0.39 0.91 16 27 H 0.41 6.01 6.36 -40.82 -0.26 5.75 16 28 H 0.09 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 31 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 278.78 15.07 4.20 4.20 Total: -1.00 -33.75 278.78 -4.97 -38.72 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.11 Total: 12.65 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -1.54 Total: 9.77 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 1.03 Total: -55.68 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.16 Total: -23.70 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.75 -4.97 -38.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323224889.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.101 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds