Wall clock time and date at job start Sun Mar 29 2020 23:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50707 * 109.46691 * 240.00394 * 2 1 3 5 5 H 1.08002 * 119.99794 * 239.99703 * 4 2 1 6 6 C 1.37876 * 119.99997 * 60.00047 * 4 2 1 7 7 N 1.31516 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47195 * 89.99983 * 8 6 4 10 10 H 1.48499 * 109.47159 * 209.99893 * 8 6 4 11 11 H 1.48507 * 109.47229 * 330.00160 * 8 6 4 12 12 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 13 13 O 1.21288 * 120.00231 * 120.26902 * 12 2 1 14 14 N 1.34784 * 119.99635 * 299.99856 * 12 2 1 15 15 C 1.40198 * 119.99707 * 179.97438 * 14 12 2 16 16 C 1.39809 * 125.69246 * 359.72135 * 15 14 12 17 17 C 1.37940 * 107.63319 * 179.83188 * 16 15 14 18 18 C 1.47181 * 126.42059 * 180.17800 * 17 16 15 19 19 N 1.34771 * 120.00146 * 180.31420 * 18 17 16 20 20 O 1.21629 * 120.00030 * 0.31258 * 18 17 16 21 21 N 1.36685 * 107.15838 * 0.41897 * 17 16 15 22 22 H 0.96999 * 126.07963 * 179.73864 * 21 17 16 23 23 N 1.31323 * 125.68544 * 180.02562 * 15 14 12 24 24 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 26 26 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 27 27 H 0.96998 * 119.99718 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00044 * 0.02562 * 14 12 2 29 29 H 1.08009 * 126.18416 * 0.02562 * 16 15 14 30 30 H 0.97003 * 120.00071 * 359.97438 * 19 18 17 31 31 H 0.96996 * 120.00170 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3222 -1.1193 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4869 -0.1400 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7105 1.2303 13 8 2.7337 -1.6937 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1737 -0.9114 3.5992 16 6 2.9759 -2.0564 3.6095 17 6 3.2161 -2.3865 4.9271 18 6 4.0187 -3.5211 5.4113 19 7 4.1639 -3.7275 6.7352 20 8 4.5510 -4.2726 4.6167 21 7 2.5644 -1.4655 5.6987 22 1 2.5474 -1.4421 6.6683 23 7 1.9259 -0.5618 4.8405 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 0.7088 1.1616 -3.4843 28 1 1.1488 0.5384 2.5436 29 1 3.3439 -2.5850 2.7424 30 1 3.7397 -3.1281 7.3689 31 1 4.6926 -4.4755 7.0543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328582684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:28 Heat of formation + Delta-G solvation = 2.231744 kcal Electronic energy + Delta-G solvation = -17915.518444 eV Core-core repulsion = 14812.794383 eV Total energy + Delta-G solvation = -3102.724061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34291 -39.37342 -38.66737 -34.53028 -33.91813 -33.84296 -30.97310 -30.17766 -29.64023 -25.19036 -24.12755 -23.47696 -20.86110 -20.57184 -19.30129 -18.84894 -17.25967 -16.75695 -16.20520 -15.50548 -15.48489 -15.30670 -14.59749 -14.54771 -13.83788 -13.71622 -13.21878 -13.08397 -12.60330 -11.66862 -11.06735 -11.01921 -10.88809 -10.71607 -10.67017 -10.36628 -10.29615 -10.11483 -10.00180 -9.04193 -8.86750 -8.77700 -8.39266 -8.17720 -6.07024 -4.10871 1.04372 2.41512 2.47746 3.00750 3.13169 3.34496 3.40340 3.47001 3.63387 3.72416 4.45086 4.59756 4.99410 5.26945 5.48169 5.62263 5.98344 6.35040 6.46279 6.57167 6.71941 6.76310 6.84168 7.08771 7.09857 7.28422 7.43443 7.71761 7.86540 7.94612 8.06699 8.28937 8.92861 8.99036 9.55108 11.00609 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004924 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.016882 B = 5685.520924 C = 6392.640825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.060 0.940 4 C -0.505 4.505 5 H 0.077 0.923 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.271 1.271 12 C 0.525 3.475 13 O -0.512 6.512 14 N -0.647 5.647 15 C 0.308 3.692 16 C -0.171 4.171 17 C 0.019 3.981 18 C 0.594 3.406 19 N -0.852 5.852 20 O -0.512 6.512 21 N -0.465 5.465 22 H 0.438 0.562 23 N -0.302 5.302 24 H 0.034 0.966 25 H 0.014 0.986 26 H 0.097 0.903 27 H 0.262 0.738 28 H 0.415 0.585 29 H 0.188 0.812 30 H 0.397 0.603 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -2.570 18.343 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 H 0.078 0.922 4 C -0.543 4.543 5 H 0.095 0.905 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.196 1.196 12 C 0.316 3.684 13 O -0.384 6.384 14 N -0.299 5.299 15 C 0.053 3.947 16 C -0.203 4.203 17 C -0.109 4.109 18 C 0.377 3.623 19 N -0.417 5.417 20 O -0.384 6.384 21 N -0.181 5.181 22 H 0.282 0.718 23 N -0.136 5.136 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.251 0.749 29 H 0.205 0.795 30 H 0.225 0.775 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.596 -2.790 18.020 18.304 hybrid contribution 0.281 -0.436 -0.081 0.525 sum 1.877 -3.226 17.939 18.323 Atomic orbital electron populations 1.21799 0.96076 1.00227 1.01328 1.18931 0.94438 0.97045 0.88076 0.92206 1.21121 1.31418 1.13037 0.88719 0.90484 1.24934 0.94986 0.94998 0.99164 1.69863 1.36913 1.22935 1.23740 0.86413 0.79544 0.79208 0.81855 1.20612 1.21289 1.19619 1.22486 0.78300 0.84381 0.83272 1.90489 1.36110 1.26120 1.85657 1.43614 1.52565 1.31243 1.02435 1.19310 0.95239 0.92908 0.87237 1.22479 1.03109 0.98417 0.96300 1.21200 1.02262 0.94926 0.92534 1.17083 0.79597 0.83097 0.82545 1.43670 1.56705 1.34623 1.06732 1.90934 1.46917 1.45688 1.54862 1.46051 1.41933 1.22119 1.08036 0.71772 1.77258 1.22392 1.14910 0.99071 0.94663 0.96665 0.88463 0.92833 0.74912 0.79537 0.77524 0.75835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.87 37.15 0.33 -2.68 16 2 C 0.04 0.87 2.64 -92.93 -0.25 0.62 16 3 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 4 C -0.50 -13.86 8.37 -34.44 -0.29 -14.15 16 5 H 0.08 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.50 11.32 55.43 0.63 -23.87 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.53 11.63 7.12 -10.98 -0.08 11.55 16 13 O -0.51 -12.72 12.56 5.55 0.07 -12.65 16 14 N -0.65 -11.72 5.34 -11.25 -0.06 -11.78 16 15 C 0.31 5.44 8.07 -154.49 -1.25 4.19 16 16 C -0.17 -3.10 9.41 -39.10 -0.37 -3.46 16 17 C 0.02 0.27 7.12 -82.18 -0.58 -0.31 16 18 C 0.59 7.50 8.08 -12.63 -0.10 7.40 16 19 N -0.85 -5.65 8.87 30.37 0.27 -5.38 16 20 O -0.51 -8.78 17.73 5.25 0.09 -8.69 16 21 N -0.47 -5.30 7.33 33.41 0.24 -5.06 16 22 H 0.44 2.85 8.23 -182.65 -1.50 1.35 16 23 N -0.30 -4.55 12.68 31.34 0.40 -4.15 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.01 0.27 7.56 -51.92 -0.39 -0.13 16 26 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.41 6.39 8.24 -40.82 -0.34 6.05 16 29 H 0.19 3.93 5.88 -52.48 -0.31 3.62 16 30 H 0.40 1.28 8.00 -40.82 -0.33 0.95 16 31 H 0.41 2.09 8.93 -40.82 -0.36 1.73 16 LS Contribution 275.93 15.07 4.16 4.16 Total: -1.00 -33.73 275.93 -5.78 -39.51 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.88 Total: 6.75 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -2.68 Total: 4.69 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 1.48 Total: -50.24 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.16 Total: -21.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.73 -5.78 -39.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328582684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.739 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds