Wall clock time and date at job start Sun Mar 29 2020 23:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.50707 * 109.46691 * 240.00394 * 2 1 3 5 5 H 1.08002 * 119.99794 * 239.99703 * 4 2 1 6 6 C 1.37876 * 119.99997 * 60.00047 * 4 2 1 7 7 N 1.31516 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99824 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47195 * 89.99983 * 8 6 4 10 10 H 1.48499 * 109.47159 * 209.99893 * 8 6 4 11 11 H 1.48507 * 109.47229 * 330.00160 * 8 6 4 12 12 C 1.50695 * 109.47448 * 120.00595 * 2 1 3 13 13 O 1.21288 * 120.00231 * 120.26902 * 12 2 1 14 14 N 1.34784 * 119.99635 * 299.99856 * 12 2 1 15 15 C 1.40198 * 119.99707 * 179.97438 * 14 12 2 16 16 C 1.39809 * 125.69246 * 359.72135 * 15 14 12 17 17 C 1.37940 * 107.63319 * 179.83188 * 16 15 14 18 18 C 1.47181 * 126.42059 * 180.17800 * 17 16 15 19 19 N 1.34771 * 120.00146 * 180.31420 * 18 17 16 20 20 O 1.21629 * 120.00030 * 0.31258 * 18 17 16 21 21 N 1.36685 * 107.15838 * 0.41897 * 17 16 15 22 22 H 0.96999 * 126.07963 * 179.73864 * 21 17 16 23 23 N 1.31323 * 125.68544 * 180.02562 * 15 14 12 24 24 H 1.08997 * 109.47563 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47290 * 299.99459 * 1 2 3 26 26 H 1.09005 * 109.47504 * 59.99649 * 1 2 3 27 27 H 0.96998 * 119.99718 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00044 * 0.02562 * 14 12 2 29 29 H 1.08009 * 126.18416 * 0.02562 * 16 15 14 30 30 H 0.97003 * 120.00071 * 359.97438 * 19 18 17 31 31 H 0.96996 * 120.00170 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3222 -1.1193 -4.0081 9 1 1.3445 -2.1613 -4.4125 10 1 2.4869 -0.1400 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 6 2.0323 -0.7105 1.2303 13 8 2.7337 -1.6937 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1737 -0.9114 3.5992 16 6 2.9759 -2.0564 3.6095 17 6 3.2161 -2.3865 4.9271 18 6 4.0187 -3.5211 5.4113 19 7 4.1639 -3.7275 6.7352 20 8 4.5510 -4.2726 4.6167 21 7 2.5644 -1.4655 5.6987 22 1 2.5474 -1.4421 6.6683 23 7 1.9259 -0.5618 4.8405 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 0.7088 1.1616 -3.4843 28 1 1.1488 0.5384 2.5436 29 1 3.3439 -2.5850 2.7424 30 1 3.7397 -3.1281 7.3689 31 1 4.6926 -4.4755 7.0543 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328582684.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:27 Heat of formation + Delta-G solvation = -26.263550 kcal Electronic energy + Delta-G solvation = -17916.754092 eV Core-core repulsion = 14812.794383 eV Total energy + Delta-G solvation = -3103.959710 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.59756 -40.78339 -40.01149 -35.98421 -35.82270 -34.92249 -32.74918 -31.43323 -31.08657 -27.19614 -25.25142 -25.20058 -22.43884 -21.75265 -20.80998 -19.87416 -18.47290 -18.20596 -17.95250 -17.03572 -16.72877 -16.62317 -16.36932 -16.01436 -15.21995 -15.04614 -14.76635 -14.55420 -14.45535 -13.52859 -12.94752 -12.72378 -12.56433 -12.33231 -12.28842 -12.08368 -12.00666 -11.53612 -11.04577 -10.94594 -10.63502 -10.37397 -10.11034 -9.53385 -8.14201 -6.24240 -0.12594 1.06072 1.23818 1.43998 1.45367 1.57071 1.92960 1.95837 2.15966 2.40410 2.51593 3.16483 3.66615 3.75458 4.07731 4.34179 4.43820 4.75256 4.93038 5.00299 5.07254 5.47767 5.59397 5.64285 5.74355 5.76122 5.95961 6.15587 6.24769 6.31771 6.69942 6.84603 7.04443 7.25782 7.44948 8.91771 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.004924 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.016882 B = 5685.520924 C = 6392.640825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 H 0.054 0.946 4 C -0.530 4.530 5 H 0.052 0.948 6 C 0.024 3.976 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.530 3.470 13 O -0.547 6.547 14 N -0.633 5.633 15 C 0.289 3.711 16 C -0.220 4.220 17 C 0.047 3.953 18 C 0.596 3.404 19 N -0.814 5.814 20 O -0.563 6.563 21 N -0.424 5.424 22 H 0.464 0.536 23 N -0.292 5.292 24 H 0.025 0.975 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.428 0.572 29 H 0.151 0.849 30 H 0.419 0.581 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -2.316 20.938 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.569 4.569 5 H 0.070 0.930 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.320 3.680 13 O -0.421 6.421 14 N -0.284 5.284 15 C 0.035 3.965 16 C -0.253 4.253 17 C -0.085 4.085 18 C 0.378 3.622 19 N -0.380 5.380 20 O -0.439 6.439 21 N -0.143 5.143 22 H 0.315 0.685 23 N -0.127 5.127 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.267 0.733 29 H 0.168 0.832 30 H 0.250 0.750 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.205 -2.480 20.744 20.926 hybrid contribution 0.414 -0.524 -0.659 0.939 sum 1.619 -3.004 20.084 20.372 Atomic orbital electron populations 1.21623 0.94553 0.99847 1.02201 1.18838 0.95630 0.96320 0.88036 0.92796 1.21265 1.31879 1.12917 0.90813 0.92983 1.25531 0.95125 0.95669 1.01273 1.69933 1.37054 1.23371 1.24423 0.85609 0.78639 0.78518 0.79202 1.20051 1.20030 1.20443 1.22004 0.78040 0.83832 0.84164 1.90502 1.37658 1.27566 1.86399 1.43070 1.52186 1.31347 1.01781 1.19224 0.96372 0.93292 0.87590 1.22189 1.05948 0.99920 0.97224 1.21155 1.00961 0.94884 0.91491 1.16942 0.79113 0.82140 0.83963 1.43354 1.55195 1.34771 1.04678 1.90929 1.49045 1.47227 1.56681 1.46040 1.39253 1.19986 1.09043 0.68542 1.77217 1.22192 1.15186 0.98144 0.95559 0.92640 0.90602 0.92505 0.73337 0.83189 0.74971 0.74186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.87 71.98 0.64 -4.84 16 2 C 0.03 1.62 2.64 -12.29 -0.03 1.59 16 3 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 4 C -0.53 -30.10 8.37 25.60 0.21 -29.89 16 5 H 0.05 3.16 6.75 -2.91 -0.02 3.14 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -49.97 11.32 21.45 0.24 -49.73 16 8 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.53 24.15 7.12 87.65 0.62 24.78 16 13 O -0.55 -28.66 12.56 -3.05 -0.04 -28.70 16 14 N -0.63 -22.84 5.34 -307.88 -1.65 -24.49 16 15 C 0.29 10.03 8.07 133.13 1.07 11.10 16 16 C -0.22 -8.12 9.41 22.58 0.21 -7.91 16 17 C 0.05 1.24 7.12 40.67 0.29 1.53 16 18 C 0.60 13.97 8.08 86.59 0.70 14.67 16 19 N -0.81 -7.76 8.87 -176.06 -1.56 -9.32 16 20 O -0.56 -19.28 17.73 -4.12 -0.07 -19.36 16 21 N -0.42 -8.22 7.33 -48.21 -0.35 -8.57 16 22 H 0.46 3.73 8.23 -213.36 -1.76 1.97 16 23 N -0.29 -8.09 12.68 -54.76 -0.69 -8.79 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.94 7.56 -2.38 -0.02 1.92 16 26 H 0.08 3.70 6.07 -2.38 -0.01 3.68 16 27 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.43 12.69 8.24 -92.71 -0.76 11.93 16 29 H 0.15 6.78 5.88 -2.91 -0.02 6.76 16 30 H 0.42 0.61 8.00 -92.71 -0.74 -0.14 16 31 H 0.42 2.75 8.93 -92.71 -0.83 1.92 16 Total: -1.00 -76.66 275.93 -0.78 -77.44 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -2.85 Total: 12.07 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 4.17 Total: 12.78 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -4.01 Total: -100.89 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.11 Total: -48.05 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.66 -0.78 -77.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328582684.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.176 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds