Wall clock time and date at job start Sun Mar 29 2020 23:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35403 * 126.43973 * 2 1 4 4 C 1.35563 * 107.16213 * 180.02562 * 3 2 1 5 5 N 1.33099 * 108.35134 * 0.02562 * 4 3 2 6 6 C 1.31614 * 109.09523 * 359.97438 * 5 4 3 7 7 C 1.47409 * 125.86666 * 179.73243 * 6 5 4 8 8 O 1.21610 * 120.00160 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00138 * 0.03326 * 7 6 5 10 10 C 1.46499 * 120.00463 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47304 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00218 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99892 * 180.02562 * 11 10 9 14 14 C 1.37103 * 120.00238 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99338 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00475 * 179.97438 * 14 13 11 17 17 N 1.31409 * 120.00388 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99595 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47128 * 90.00443 * 18 16 14 20 20 H 1.48496 * 109.47125 * 209.99862 * 18 16 14 21 21 H 1.48495 * 109.47298 * 330.00306 * 18 16 14 22 22 H 1.09005 * 109.47009 * 269.95881 * 1 2 3 23 23 H 1.09006 * 109.46854 * 29.95768 * 1 2 3 24 24 H 1.08997 * 109.47005 * 149.96030 * 1 2 3 25 25 H 1.07997 * 126.42308 * 359.97438 * 3 2 1 26 26 H 1.08004 * 125.83014 * 179.97438 * 4 3 2 27 27 H 0.97003 * 119.99779 * 359.97438 * 9 7 6 28 28 H 1.09004 * 109.46832 * 299.99961 * 10 9 7 29 29 H 1.08995 * 109.47152 * 59.99748 * 10 9 7 30 30 H 0.96999 * 120.00070 * 359.97438 * 13 11 10 31 31 H 0.96995 * 120.00153 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.0893 0.0000 4 6 3.5488 0.6417 -0.0006 5 7 3.5273 -0.6891 -0.0015 6 6 2.2768 -1.0995 -0.0010 7 6 1.8287 -2.5038 -0.0072 8 8 0.6405 -2.7629 -0.0065 9 7 2.7357 -3.5006 -0.0136 10 6 2.2904 -4.8962 -0.0192 11 6 3.4913 -5.8067 -0.0251 12 8 4.6091 -5.3361 -0.0251 13 7 3.3231 -7.1438 -0.0314 14 6 4.4156 -7.9722 -0.0373 15 1 5.4109 -7.5531 -0.0373 16 6 4.2422 -9.3508 -0.0433 17 7 5.2893 -10.1447 -0.0494 18 14 2.5205 -10.0756 -0.0426 19 1 2.0610 -10.2613 -1.4425 20 1 2.5364 -11.3884 0.6513 21 1 1.5955 -9.1534 0.6638 22 1 -0.3633 -0.0007 1.0277 23 1 -0.3633 0.8904 -0.5132 24 1 -0.3633 -0.8896 -0.5144 25 1 1.9510 2.1213 -0.0004 26 1 4.4347 1.2596 -0.0011 27 1 3.6835 -3.2939 -0.0144 28 1 1.6921 -5.0903 0.8711 29 1 1.6888 -5.0820 -0.9089 30 1 2.4291 -7.5202 -0.0318 31 1 5.1683 -11.1071 -0.0540 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329667031.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:16 Heat of formation + Delta-G solvation = -0.824591 kcal Electronic energy + Delta-G solvation = -17654.230502 eV Core-core repulsion = 14551.373909 eV Total energy + Delta-G solvation = -3102.856594 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.36779 -39.45175 -38.21670 -34.87262 -34.18873 -33.61487 -31.79573 -30.29806 -27.93441 -27.24262 -24.61446 -22.83671 -21.51999 -20.08476 -19.58548 -18.70148 -17.79970 -16.49483 -16.26412 -15.79031 -15.33110 -15.17109 -14.84132 -14.33950 -13.95106 -13.89876 -13.61686 -13.13162 -13.07628 -12.87804 -12.49393 -12.17000 -12.13029 -11.23106 -10.63773 -10.36599 -10.18725 -10.04308 -9.94753 -9.68535 -9.08496 -8.76286 -8.64348 -8.29065 -6.38983 -3.91600 1.27502 2.29712 2.51608 3.00033 3.04575 3.12812 3.28991 3.39658 3.57663 4.04599 4.30737 4.51783 4.54003 4.67506 4.94511 5.13323 5.15069 5.26165 5.37853 5.61949 5.73273 5.75938 6.00007 6.41509 6.47043 6.72688 7.42515 7.50553 7.83316 8.01243 8.19874 8.46737 8.83599 9.31080 9.64661 10.73240 Molecular weight = 252.10amu Principal moments of inertia in cm(-1) A = 0.047371 B = 0.004217 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.932488 B = 6638.506509 C = 7208.989237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.419 5.419 3 C -0.035 4.035 4 C -0.027 4.027 5 N -0.439 5.439 6 C 0.144 3.856 7 C 0.606 3.394 8 O -0.552 6.552 9 N -0.679 5.679 10 C 0.107 3.893 11 C 0.437 3.563 12 O -0.572 6.572 13 N -0.576 5.576 14 C -0.310 4.310 15 H 0.122 0.878 16 C 0.045 3.955 17 N -0.874 5.874 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.183 0.817 26 H 0.178 0.822 27 H 0.425 0.575 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.374 0.626 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.719 18.927 -0.008 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.099 5.099 3 C -0.173 4.173 4 C -0.181 4.181 5 N -0.161 5.161 6 C -0.116 4.116 7 C 0.390 3.610 8 O -0.431 6.431 9 N -0.333 5.333 10 C -0.021 4.021 11 C 0.223 3.777 12 O -0.456 6.456 13 N -0.214 5.214 14 C -0.438 4.438 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.513 5.513 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.127 0.873 25 H 0.200 0.800 26 H 0.196 0.804 27 H 0.265 0.735 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.207 0.793 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.213 18.186 -0.010 21.365 hybrid contribution -1.539 0.022 0.042 1.539 sum -12.752 18.208 0.033 22.229 Atomic orbital electron populations 1.22352 0.75207 1.05648 1.04458 1.45067 1.08381 1.05869 1.50572 1.22911 0.91627 0.92850 1.09947 1.22477 0.96552 0.90898 1.08140 1.70290 1.17781 1.12577 1.15420 1.22622 0.85867 0.89995 1.13094 1.16361 0.85385 0.82025 0.77252 1.90764 1.15904 1.83902 1.52500 1.45365 1.11698 1.04521 1.71699 1.21069 0.96736 0.80586 1.03686 1.19564 0.89784 0.83106 0.85260 1.90579 1.25090 1.74713 1.55173 1.42099 1.08643 1.05078 1.65594 1.19458 0.88520 0.87254 1.48580 0.86008 1.25060 0.97853 0.95799 0.97179 1.69616 1.29112 1.04384 1.48213 0.86670 0.83792 0.79914 0.79098 1.19409 1.20004 1.19246 0.90037 0.89647 0.87317 0.80003 0.80446 0.73465 0.89264 0.89249 0.79271 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.63 59.84 0.64 1.17 16 2 N -0.42 -4.79 3.16 -121.97 -0.39 -5.18 16 3 C -0.04 -0.33 11.53 -16.93 -0.20 -0.52 16 4 C -0.03 -0.31 11.85 -17.96 -0.21 -0.52 16 5 N -0.44 -6.71 10.89 -11.26 -0.12 -6.84 16 6 C 0.14 2.15 7.79 -154.52 -1.20 0.95 16 7 C 0.61 9.96 7.81 -12.53 -0.10 9.86 16 8 O -0.55 -9.38 14.68 5.27 0.08 -9.30 16 9 N -0.68 -11.85 5.52 -62.57 -0.35 -12.19 16 10 C 0.11 1.86 6.15 -5.20 -0.03 1.83 16 11 C 0.44 9.77 7.85 -10.99 -0.09 9.68 16 12 O -0.57 -14.92 15.24 5.55 0.08 -14.83 16 13 N -0.58 -13.44 5.09 -10.97 -0.06 -13.50 16 14 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 15 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 16 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 17 N -0.87 -25.07 13.96 55.50 0.77 -24.30 16 18 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.11 1.08 6.34 -51.93 -0.33 0.75 16 25 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 26 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 27 H 0.42 7.93 7.12 -40.82 -0.29 7.64 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 31 H 0.28 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 279.90 15.07 4.22 4.22 Total: -1.00 -33.86 279.90 -4.86 -38.72 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -2.95 Total: 14.13 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: -1.44 Total: 14.82 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.13 Total: -62.00 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.16 Total: -24.13 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.86 -4.86 -38.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329667031.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.894 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds